Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq2528 176 9e-42 seq2067 152 1e-34 seq2633 102 2e-19 >seq2528 Length=1346 Score = 176 bits (194), Expect = 9e-42 Identities = 239/326 (73%), Gaps = 8/326 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 || || |||||| ||| |||||| ||| |||| |||||| ||| ||||| || | | | Sbjct 996 AGCGGAGTGAAAAAGAACCTGAAACCGTGCGCTTACAAGAAGTCAGAGCCC-GTTAATGG 938 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCG-TCACCAGCGAGGTTAAG 129 |||| ||||||||||||| | ||||| || ||||||| || || | || |||||||| Sbjct 937 GTGATGGCGTGCCTTTTGTAGAATGAACCGGCGAGTTA--CGATCCCGTGCAAGGTTAAG 880 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGC 188 | || || ||||| || ||||||||| || || ||||||| ||| |||| Sbjct 879 T--TGAAGAGACGG-AGCCGCAGCGAAAGCGAGTCTGAATAGGGCGATTTAGTACGTGGT 823 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 ||||| ||||||| |||||||||||| | |||| |||||| |||||| | || Sbjct 822 CGTAGACCCGAAACCAGGTGATCTACCCATGTCCAGGGTGAAGTTCAGGTAACACTGAAT 763 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| ||||||| |||||||||||| |||||| | |||||| || |||| Sbjct 762 GGAGGCCCGAACCCACGCACGTTGAAAAGTGCGGGGATGAGGTGTGGGTAGCGGAGAAAT 703 Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334 |||||| |||| ||| |||||| || Sbjct 702 TCCAATCGAACTCGGAGATAGCTGGT 677 >seq2067 Length=7856 Score = 152 bits (168), Expect = 1e-34 Identities = 230/324 (71%), Gaps = 10/324 (3%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| |||||| ||| | || ||||| || |||||| | | Sbjct 68 AGGGGAGTGAAA-AGATCCTGAAACCGTGTGCTTACAAAAAGTAGGAGCCC---GCAAGG 123 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| ||| || ||||||| Sbjct 124 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGGTTAACC 182 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || ||||| || |||| |||| | || ||||||| ||| | ||| Sbjct 183 GAATAGGGA-----AGCCGTAGAGAAATCGAGTCCGAATAGGGCGATCAGTCGCTGGGTG 237 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||||||| | |||| ||||| |||||||| || ||| Sbjct 238 TAGACCCGAAACCGTGTGATCTACCCCTGTCCAGGGTGAAGGTGCGGTAACACGCACTGG 297 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||| ||| | ||||||| | || |||||||||||||| Sbjct 298 AGGCCCGAACCGACTAGTGTTGCAAAACTAGCGGATGAGCTGTGGATAGGGGTGAAAGGC 357 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 || |||||| |||||||||| || Sbjct 358 TAAACAAACTTGGAAATAGCTGGT 381 Score = 102 bits (112), Expect = 2e-19 Identities = 212/310 (68%), Gaps = 8/310 (3%) Strand=Plus/Plus Query 12 GGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGT-GATTCG 70 |||| |||||||||| | |||| ||| || ||||| || |||| || | || || Sbjct 4931 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGAATTGAATCT 4990 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||||||| ||| | |||||||| ||| ||| | | || || |||||||| Sbjct 4991 CTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTTA-TAGGCAGTGGCCTGGTTAAGG 5049 Query 131 GCTTCAGGCC-CGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | || || | ||||| || ||||||||| ||| ||||| | || || Sbjct 5050 G----AGCCCACCGGAGCCGTAGCGAAAGCGAGTCTTCTTAGGGCAATT-GTCACTGCTT 5104 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | || Sbjct 5105 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTG 5164 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||| |||||||| | |||||||| | ||||||| | | || ||||||||||| | Sbjct 5165 GAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 5224 Query 310 CCAATCAAAC 319 ||| || ||| Sbjct 5225 CCACTCGAAC 5234 >seq2633 Length=346445 Score = 102 bits (112), Expect = 2e-19 Identities = 212/310 (68%), Gaps = 8/310 (3%) Strand=Plus/Minus Query 12 GGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGT-GATTCG 70 |||| |||||||||| | |||| ||| || ||||| || |||| || | || || Sbjct 29268 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGAATTGAATCT 29209 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||||||| ||| | |||||||| ||| ||| | | || || |||||||| Sbjct 29208 CTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTTA-TAGGCAGTGGCCTGGTTAAGG 29150 Query 131 GCTTCAGGCC-CGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | || || | ||||| || ||||||||| ||| ||||| | || || Sbjct 29149 G----AGCCCACCGGAGCCGTAGCGAAAGCGAGTCTTCTTAGGGCAATT-GTCACTGCTT 29095 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | || Sbjct 29094 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTG 29035 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||| |||||||| | |||||||| | ||||||| | | || ||||||||||| | Sbjct 29034 GAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 28975 Query 310 CCAATCAAAC 319 ||| || ||| Sbjct 28974 CCACTCGAAC 28965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972759755264