Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2490 315 1e-83 seq4020 293 4e-77 seq3140 233 3e-59 seq1749 176 7e-42 >seq2490 Length=300753 Score = 315 bits (348), Expect = 1e-83 Identities = 227/257 (88%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 247755 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 247812 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 247813 CTCGTTGAAGATCAATAATTGCAATGATCTATCCCCATCACGATGAATTTTCAAAAGATT 247872 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||||| |||| ||| ||||||||| | ||| |||| | | | |||| Sbjct 247873 ACCCGAACCTTTCGGCCCAGGTTATAAACTCGTTGAGTCCATTTGTGTGACACTCATGCG 247932 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| | Sbjct 247933 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATCGGCTAGAC 247992 Query 240 GGCCAT-CTCCCTCGAA 255 | | || |||||| || Sbjct 247993 GCCGATAGTCCCTCTAA 248009 >seq4020 Length=382506 Score = 293 bits (324), Expect = 4e-77 Identities = 227/265 (86%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||| | Sbjct 337917 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTACGCTTACTAGGAATT-C 337974 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| || ||||| |||||| Sbjct 337975 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAAAGTTTCACAAGATT 338034 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| ||| |||||||||| ||||| || | | ||||||||||||||||||| Sbjct 338035 ACCCAGTCCTTCCGGACAAGGTGATAAACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 338094 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 338095 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTAGCTAAAC 338154 Query 240 GGCCAT-CTCCCTCGAATAGCACAG 263 | | || |||||| || | |||| Sbjct 338155 GCCAATAGTCCCTCTAAGAAGACAG 338179 >seq3140 Length=124309 Score = 233 bits (258), Expect = 3e-59 Identities = 162/181 (90%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 77 AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATTACCCGGACCTGTCGGC 135 ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||| Sbjct 83280 AATTGCAATGATCTATCCCCATCACGATGAATTTTCAAAAGATTACCCGAACCTTTCGGC 83221 Query 136 CAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 195 | |||| ||| ||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 83220 CCAGGTTATAAACTCGTTGAGTCCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAG 83161 Query 196 GGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGA 254 ||||||||||||||||||||||||||||||||| | | ||| | | | || |||||| | Sbjct 83160 GGCATCACAGACCTGTTATTGCCTCAAACTTCCATCGGCTAGACGCCGATAGTCCCTCTA 83101 Query 255 A 255 | Sbjct 83100 A 83100 >seq1749 Length=163406 Score = 176 bits (194), Expect = 7e-42 Identities = 130/148 (88%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 16 ACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAA 75 ||||||||||||| |||| |||||||||||||||| ||||||| | |||||||||| ||| Sbjct 61220 ACGTAGTCAACGCAAGCT-GATGACTCGCGCTTACCAGGAATT-CTTCGTTGAAGATCAA 61277 Query 76 CAATTGCAATGATCTATCCCCATCACGATGAAATTTC-AAAGATTACCCGGACCTGTCGG 134 ||||||||||||||||||||||||||||||| |||| |||||||||||| |||| || | Sbjct 61278 TAATTGCAATGATCTATCCCCATCACGATGAATTTTCAAAAGATTACCCGAACCTTTCAG 61337 Query 135 CCAAGGTGATAGACTCGTTGAATACATC 162 || |||| ||| |||||| || | |||| Sbjct 61338 CCCAGGTTATAAACTCGTAGAGTCCATC 61365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751969861955