Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq4020 131 9e-29 seq2927 77.0 2e-12 >seq4020 Length=382506 Score = 131 bits (144), Expect = 9e-29 Identities = 103/120 (86%), Gaps = 5/120 (4%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTA-AGGTGCCGAGCGAGTCA--AAATGATAACATCG 57 ||||||||| ||||||||||||| | |||||||| |||||| |||| ||||||| Sbjct 322620 GAACCCAAAAACTTTGATTTCTCATGGAGGTGCCGGCGGAGTCATCAAAT--TAACATCC 322677 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 322678 GCCGATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 322737 >seq2927 Length=200671 Score = 77.0 bits (84), Expect = 2e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||||||||| |||| |||| |||||| |||||||||||||||||||||| Sbjct 18307 GATACCTAGTCGGCATCATTTATGGTTGAGACTATGACGGTATCTGATCGTCTTCGA 18251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278389202430