Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016
41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq4020 131 9e-29
seq2927 77.0 2e-12
>seq4020
Length=382506
Score = 131 bits (144), Expect = 9e-29
Identities = 103/120 (86%), Gaps = 5/120 (4%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTA-AGGTGCCGAGCGAGTCA--AAATGATAACATCG 57
||||||||| ||||||||||||| | |||||||| |||||| |||| |||||||
Sbjct 322620 GAACCCAAAAACTTTGATTTCTCATGGAGGTGCCGGCGGAGTCATCAAAT--TAACATCC 322677
Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 322678 GCCGATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 322737
>seq2927
Length=200671
Score = 77.0 bits (84), Expect = 2e-12
Identities = 51/57 (89%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||| |||||||||||| |||| |||| |||||| ||||||||||||||||||||||
Sbjct 18307 GATACCTAGTCGGCATCATTTATGGTTGAGACTATGACGGTATCTGATCGTCTTCGA 18251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278389202430
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |