Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq4020 363 3e-98 seq2927 138 2e-30 seq104 77.0 6e-12 >seq4020 Length=382506 Score = 363 bits (402), Expect = 3e-98 Identities = 269/310 (87%), Gaps = 3/310 (1%) Strand=Plus/Minus Query 11 GGCCGGGCCTTTCCTTCTGGGGATCC-GCATGCCCTTCACTGGGTGTGCC-GGGGAGCCA 68 ||||||| ||| ||| ||| ||||| ||||| | || ||| |||||| ||||| ||| Sbjct 323047 GGCCGGGTCTTCCCTCTTGGTGATCCTGCATGTCATTTACTTGGTGTGTATGGGGAACCA 322988 Query 69 GGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGC 128 |||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| Sbjct 322987 GGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCATTTGCCCGAATATATTAGC 322928 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 ||||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||||| Sbjct 322927 ATGGAATAATAAAATAGGACGTGCGTTTCTATTTTGTTGGTTTCTAGAATCGCCGTAATG 322868 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| ||||| | ||||| || ||||||||||||||||||||||| Sbjct 322867 ATTAATAGGGACAGTTGGGGGCATTTGTATTTCATGGTCAGAGGTGAAATTCTTGGATTC 322808 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || ||||| |||| |||||||||| || |||||||||||||||||||||| |||||| Sbjct 322807 ATGAAAGACAAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGA 322749 Query 309 AAGTTAGGGG 318 ||||| |||| Sbjct 322748 AAGTTGGGGG 322739 >seq2927 Length=200671 Score = 138 bits (152), Expect = 2e-30 Identities = 226/315 (72%), Gaps = 27/315 (9%) Strand=Plus/Plus Query 29 GGGGATCCGCAT--GCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAA 86 ||||| ||||| | |||||||| | | |||| |||| ||| | |||||| ||||| Sbjct 17937 GGGGACGCGCATCTGGCCTTCACTAGTCGGGCCGCGGAGTCAGCGATGTTACTTGGAAAA 17996 Query 87 AATTAGAGTGTTCAAAGCAGGCCTT-TGCTCG-AATACATTAGCATGGAATAATAGAATA 144 ||||| |||| ||||| | ||| | |||| | |||||||||||||| ||||| ||| Sbjct 17997 AATTATAGTGCTCAAAATAAGCCATATGCTAGGAATACATTAGCATGAAATAACGCGATA 18056 Query 145 GGACGT----------GC---GGTTCTATT-TTGTT--GGT-TTCTAGGACCGCC-GTAA 186 | || | || ||||| || || | ||| || | ||| | |||| Sbjct 18057 GTACTTTGATCTTATTGCTTTGGTTCAATCATTACTCCGGTCTTATTGGAACTAGAGTAA 18116 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCA---GTATTCAATTGTCAGAGGTGAAATTCTTG 243 ||||| |||||| |||| | || | || ||||| || ||||||| ||||||||||| Sbjct 18117 TGATTGATAGGGTTAGTTGTTGGAGACATTTGTATTTCATGGTCAGAGATGAAATTCTTG 18176 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 |||| || |||| |||| |||||||||| || |||||| | ||||||||||||| | Sbjct 18177 GATTCATGAAAGATAAACTTCTGCGAAAGCATTTGCCAAGG-TTTTTTCATTAATCA-AG 18234 Query 304 AACGAAAGTTAGGGG 318 ||| |||||| |||| Sbjct 18235 AACAAAAGTTGGGGG 18249 >seq104 Length=520787 Score = 77.0 bits (84), Expect = 6e-12 Identities = 167/243 (69%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG--CTCGAATACATTAGCATGG 132 ||||||||||||| |||||||| ||||| || | ||| | ||| |||||||||| Sbjct 61953 TTACTTTGAAAAACTTAGAGTGCTCAAAACAATTCATTGGCTTTAAATTCATTAGCATGA 62012 Query 133 AATAATAGAATAGGACGTGCGGTTC-TATTTTGTTGGT-TTCTAGGACCGCCGTAATGAT 190 ||||| ||||| | | |||| |||| | ||| | ||| | || | || |||| Sbjct 62013 AATAACGCAATAGAA--TTTTGTTCTTATTCTTTTGATCTTCGA-GATCAAAGTTTTGAT 62069 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 || || | | | | || | | ||||| || || |||| || |||||||| ||| | Sbjct 62070 TATTATGAACAATTGGAGTCATTTGTATTTCATGGTAAGAGTTGCAATTCTTGAATTCAC 62129 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| |||| || | |||| | ||| || ||||| ||| |||| |||| ||| Sbjct 62130 AAAAGACAAACTTCTACATAAGCATATGTCAAAGAAGTTTTTATTGATCA-AGAACAAAA 62188 Query 311 GTT 313 ||| Sbjct 62189 GTT 62191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915162138176