Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4020 466 7e-129 seq2479 168 3e-39 seq862 89.7 2e-15 >seq4020 Length=382506 Score = 466 bits (516), Expect = 7e-129 Identities = 514/680 (76%), Gaps = 36/680 (5%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| | |||||||||||||||| |||| |||||||||||| |||| || || Sbjct 336920 TCAACGAGTCGGGCTGTTTGGGAATGCAGCCCTAAGCGGGAGGTAAATTCCTTCCAAGGC 336861 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| ||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 336860 TAAATACGGGCGGGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 336801 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTT 214 || |||||||||||||||| | ||||||||| |||||||| | ||| | || | | Sbjct 336800 TGAAAAGAGAGTTAAAAAGTGCTTGAAATTGTCAAAAGGGAACCATTTGAAGTTAGTCAT 336741 Query 215 GCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGT-CAGGCCAGCAT 273 || || |||| || | | | |||||| | | | | | |||| |||||| Sbjct 336740 GCTTGCCTGGACTCAGCCTTGCTTTTGCTTGGTGCATT-TCCAGGTTTGCAGGTCAGCAT 336682 Query 274 CAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGC 333 | | | | | | |||||| || |||||||||| |||| ||| |||||||||| Sbjct 336681 CGGTTTTGACTGCTGGATAAGGGTGAGAGGAATGTGGCACCCTC--GGGTGTGTTATAGC 336624 Query 334 CC-------------------GGG---GTGGAATGCGGCCCGCCTGGACTGAGGTCCG-C 370 | ||| | |||| || || ||||| | | || || | Sbjct 336623 CTTTCACTGGATGCAGCAGTTGGGACCGAGGAACGCAGCGCGCCTTTATGGCGGACCTTC 336564 Query 371 G-----CTCCG-GCT-AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACG 423 | || || ||| |||||||||||||||| | | ||| | ||||||||| |||||| Sbjct 336563 GGGTACCTTCGCGCTTAGGATGCTGGCGTAATAGCTTCAAGTGACCCGTCTTGAAACACG 336504 Query 424 GACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAA 483 |||||||||||||||||| | ||||||| |||||||| ||||||| | ||| ||||||| Sbjct 336503 GACCAAGGAGTCTAACATGTCTGCGAGTCTTTGGGTGGCAAACCCATAGGCGCAATGAAA 336444 Query 484 GTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATG 543 ||||| | |||||||| || | | || ||||||||||||||||| ||| | | || | Sbjct 336443 GTGAATGCAGGTGGGATCC--TCACGGAGCACCATCGACCGATCCAGATCTTCTGTGACG 336386 Query 544 GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGG 603 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 336385 GATTTGAGTAAGAGCATGCCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGG 336326 Query 604 TGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 |||| ||||||||||||||||||||||||| |||| | ||| ||||||||||| ||||| Sbjct 336325 CGAAGTCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATACTGACGTGCAAATCGTTCGTC 336266 Query 664 AAATTTGGGTATAGGGGCGA 683 | | |||||||||||||||| Sbjct 336265 AGACTTGGGTATAGGGGCGA 336246 >seq2479 Length=609623 Score = 168 bits (186), Expect = 3e-39 Identities = 190/244 (78%), Gaps = 14/244 (6%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| ||||||||||||||||| |||||| ||||||| |||| | ||| Sbjct 436950 CGACCCGTCTTGAAACACGGACCAAGGAGTTTAACATGCATGCGAGCCGGTGGGCGGCAA 436891 Query 465 ACCCG--TGCG-CGTAATGAAAGTGAACGGAGGTGGGA-AC----CCGTGAGGGTGCACC 516 |||| || | || || || | ||| | ||| || || ||| | ||||||| | Sbjct 436890 ACCCACTTGAGGCGCAAATAACTT-AACTG--GTGTGATACTCCTCCGCG-GGGTGCAAC 436835 Query 517 ATCGACCGATCCTGATGT-CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCG 575 ||||||| | | ||| | || | | || || |||||||||||| |||||||||| || Sbjct 436834 ATCGACCAACCATGAGCTTCTGCAAAAGG-TTCGAGTAAGAGCATGCCTGTTGGGACTCG 436776 Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 |||||||||||||||||||||| ||||| |||| ||||||||||||| ||||||||||| Sbjct 436775 AAAGATGGTGAACTATGCCTGAGTAGGGCGAAGTCAGAGGAAACTCTAGTGGAGGCTCGT 436716 Query 636 AGCG 639 |||| Sbjct 436715 AGCG 436712 >seq862 Length=199078 Score = 89.7 bits (98), Expect = 2e-15 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||||||||||||||||||||||||||| ||| | || |||| |||||||||| ||||| Sbjct 124735 TGGGACCCGAAAGATGGTGAACTATGCTTGAGCAAGGCGAAGTAAGAGGAAACTTTGGTG 124676 Query 627 GAGGCTCGCAGC 638 |||||||| ||| Sbjct 124675 GAGGCTCGTAGC 124664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079911261350