Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016
41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq1660 237 4e-60
seq1665 134 4e-29
seq3824 111 4e-22
seq1458 93.3 1e-16
seq1770 86.0 2e-14
seq1294 82.4 2e-13
seq283 82.4 2e-13
seq595 80.6 7e-13
>seq1660
Length=229051
Score = 237 bits (262), Expect = 4e-60
Identities = 302/412 (73%), Gaps = 8/412 (2%)
Strand=Plus/Plus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| |||
Sbjct 213850 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 213909
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | |||||||||||||| | ||| || | | |||| | | ||
Sbjct 213910 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 213969
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||||||| ||||| |||| ||| || | | ||| | || |||| | ||
Sbjct 213970 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 214029
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||| | ||| ||| |||||||||||||| || | | ||||||||||||
Sbjct 214030 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAATGG 214089
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||| ||| | ||||| |||||||| || | |||||||| |||||||||| |
Sbjct 214090 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGG 214149
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTA---GTTGTTGGGGATTT 359
|||||||||||| ||||||| ||| |||||||| |||| | || || | ||
Sbjct 214150 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAAGCGCTG-TGCGTATCG 214208
Query 360 ACTTCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| || || || ||||||||||||| |||| ||||||||||| |||
Sbjct 214209 AC--CCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 214258
>seq1665
Length=82516
Score = 134 bits (148), Expect = 4e-29
Identities = 167/225 (74%), Gaps = 8/225 (4%)
Strand=Plus/Minus
Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249
|||||| | ||| ||| |||||||||||||| || | | |||||||||||||||| ||
Sbjct 34076 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAATGGCGAAAGC 34017
Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309
| | ||||| |||||||| || | |||||||| |||||||||| ||||||||
Sbjct 34016 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGA 33957
Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTA---GTTGTTGGGGATTTACTTCCT 366
||||| ||||||| ||| |||||||| |||| | || || | || || ||
Sbjct 33956 TACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAAGCGCTG-TGCGTATCGAC--CCG 33900
Query 367 TG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| || ||||||||||||| |||| ||||||||||| |||
Sbjct 33899 TGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 33855
Score = 107 bits (118), Expect = 5e-21
Identities = 107/139 (77%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| |||| ||||||||| |||||||| |||||||||| |||||||| || ||| |||
Sbjct 34328 TATCTGAGGAATAAGCATAGGCTAACTCTGTGCCAGCAGTCGCGGTAAGACAGAGGATGC 34269
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | |||||||||||||| | ||| || | | |||| | | |
Sbjct 34268 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGGAGGTGGCTTTTTAAGTCCGCCGA 34209
Query 123 GAAATCCCCGGGCTTAACC 141
|||| | ||||| ||||
Sbjct 34208 CTAATCACAGGGCTCAACC 34190
>seq3824
Length=100310
Score = 111 bits (122), Expect = 4e-22
Identities = 84/99 (85%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67
|||||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| |
Sbjct 44093 GAAGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 44034
Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT 106
||| ||||||| ||| ||||||||| | || |||||||
Sbjct 44033 TTATTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGT 43995
>seq1458
Length=540783
Score = 93.3 bits (102), Expect = 1e-16
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 23 GCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACT 82
||||||| ||||||||||||||||||| || || ||||||||||| |||||| | |
Sbjct 50179 GCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGTATGCAAGCGTTATCCGGAATGATT 50120
Query 83 GGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACC 141
||||||||||||| | ||| || | | |||| | | || ||||| | |||| ||||
Sbjct 50119 GGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCTCATGGCTCAACC 50061
>seq1770
Length=545590
Score = 86.0 bits (94), Expect = 2e-14
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 281 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
||||||| |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 250197 CGAAAGCATGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCATGCTGTAAACGAT 250253
>seq1294
Length=413606
Score = 82.4 bits (90), Expect = 2e-13
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| |||| | ||||||| ||||||||| ||||||||||||||||||| || ||| |||
Sbjct 6143 TATCTGAGGGATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 6202
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAA 90
|||||||| ||||| | | |||| ||
Sbjct 6203 AAGCGTTATCCGGAACCATTAGGCGCAA 6230
>seq283
Length=526082
Score = 82.4 bits (90), Expect = 2e-13
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 6 CTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAG 65
|||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||||||
Sbjct 410021 CTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAG 410080
Query 66 CGTTAATCGGAAT 78
||||| || |||
Sbjct 410081 CGTTATCCGTAAT 410093
>seq595
Length=533780
Score = 80.6 bits (88), Expect = 7e-13
Identities = 91/121 (75%), Gaps = 1/121 (1%)
Strand=Plus/Minus
Query 200 GTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGG 259
||||||| | |||||| | |||| || | |||| |||| | ||||||||| |||
Sbjct 27981 GTGTAGCGATAAAATGCAAAAATATATGAATGAACGCCAAAAGTGAAGGCAGCTTTTTGG 27922
Query 260 GATAACAC-TGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGT 318
|| | ||||||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 27921 TTTATTAAATGACGCTAAATTGCGAAAGCACGGGGAGCAAACAGGATTAGATACCCTGGT 27862
Query 319 A 319
|
Sbjct 27861 A 27861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289546649248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |