Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1660 237 4e-60 seq1665 134 4e-29 seq3824 111 4e-22 seq1458 93.3 1e-16 seq1770 86.0 2e-14 seq1294 82.4 2e-13 seq283 82.4 2e-13 seq595 80.6 7e-13 >seq1660 Length=229051 Score = 237 bits (262), Expect = 4e-60 Identities = 302/412 (73%), Gaps = 8/412 (2%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 213850 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 213909 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 213910 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 213969 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 213970 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 214029 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | |||||||||||| Sbjct 214030 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAATGG 214089 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| |||||||||| | Sbjct 214090 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGG 214149 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTA---GTTGTTGGGGATTT 359 |||||||||||| ||||||| ||| |||||||| |||| | || || | || Sbjct 214150 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAAGCGCTG-TGCGTATCG 214208 Query 360 ACTTCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 214209 AC--CCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 214258 >seq1665 Length=82516 Score = 134 bits (148), Expect = 4e-29 Identities = 167/225 (74%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| |||||||||||||| || | | |||||||||||||||| || Sbjct 34076 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAATGGCGAAAGC 34017 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| |||||||| || | |||||||| |||||||||| |||||||| Sbjct 34016 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGA 33957 Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTA---GTTGTTGGGGATTTACTTCCT 366 ||||| ||||||| ||| |||||||| |||| | || || | || || || Sbjct 33956 TACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAAGCGCTG-TGCGTATCGAC--CCG 33900 Query 367 TG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || ||||||||||||| |||| ||||||||||| ||| Sbjct 33899 TGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 33855 Score = 107 bits (118), Expect = 5e-21 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| |||||||| |||||||||| |||||||| || ||| ||| Sbjct 34328 TATCTGAGGAATAAGCATAGGCTAACTCTGTGCCAGCAGTCGCGGTAAGACAGAGGATGC 34269 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | | Sbjct 34268 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGGAGGTGGCTTTTTAAGTCCGCCGA 34209 Query 123 GAAATCCCCGGGCTTAACC 141 |||| | ||||| |||| Sbjct 34208 CTAATCACAGGGCTCAACC 34190 >seq3824 Length=100310 Score = 111 bits (122), Expect = 4e-22 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 |||||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 44093 GAAGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 44034 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT 106 ||| ||||||| ||| ||||||||| | || ||||||| Sbjct 44033 TTATTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGT 43995 >seq1458 Length=540783 Score = 93.3 bits (102), Expect = 1e-16 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 23 GCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACT 82 ||||||| ||||||||||||||||||| || || ||||||||||| |||||| | | Sbjct 50179 GCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGTATGCAAGCGTTATCCGGAATGATT 50120 Query 83 GGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACC 141 ||||||||||||| | ||| || | | |||| | | || ||||| | |||| |||| Sbjct 50119 GGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCTCATGGCTCAACC 50061 >seq1770 Length=545590 Score = 86.0 bits (94), Expect = 2e-14 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 281 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||| |||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 250197 CGAAAGCATGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCATGCTGTAAACGAT 250253 >seq1294 Length=413606 Score = 82.4 bits (90), Expect = 2e-13 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| | ||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 6143 TATCTGAGGGATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 6202 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAA 90 |||||||| ||||| | | |||| || Sbjct 6203 AAGCGTTATCCGGAACCATTAGGCGCAA 6230 >seq283 Length=526082 Score = 82.4 bits (90), Expect = 2e-13 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 6 CTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAG 65 |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| |||||| Sbjct 410021 CTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAG 410080 Query 66 CGTTAATCGGAAT 78 ||||| || ||| Sbjct 410081 CGTTATCCGTAAT 410093 >seq595 Length=533780 Score = 80.6 bits (88), Expect = 7e-13 Identities = 91/121 (75%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 200 GTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGG 259 ||||||| | |||||| | |||| || | |||| |||| | ||||||||| ||| Sbjct 27981 GTGTAGCGATAAAATGCAAAAATATATGAATGAACGCCAAAAGTGAAGGCAGCTTTTTGG 27922 Query 260 GATAACAC-TGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGT 318 || | ||||||| | ||||||| ||||||||||||||||||||||||||||| Sbjct 27921 TTTATTAAATGACGCTAAATTGCGAAAGCACGGGGAGCAAACAGGATTAGATACCCTGGT 27862 Query 319 A 319 | Sbjct 27861 A 27861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289546649248