Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2067 145 1e-32 seq2686 82.4 1e-13 >seq2067 Length=7856 Score = 145 bits (160), Expect = 1e-32 Identities = 180/248 (73%), Gaps = 20/248 (8%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 6303 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 6245 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| | || || |||||||| || Sbjct 6244 AGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACCTCC--------- 6194 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || || || ||||||||||||||||||||||||||| |||||||||| Sbjct 6193 --------TTTTTGAGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 6144 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||| ||||||||||||| | |||||||||||| Sbjct 6143 TTCCTTAGAGAGAGTTATCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGT 6084 Query 241 TTACGGTA 248 || |||| Sbjct 6083 TTCGGGTA 6076 Score = 138 bits (152), Expect = 2e-30 Identities = 181/248 (73%), Gaps = 11/248 (4%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| || |||| | || || ||| | || Sbjct 1408 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 1350 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||||| ||||||||||| || | ||| | ||| ||| | |||| ||| Sbjct 1349 GTGTTTTTAATAAACAGTCGCAGCCACCGATTTTTTGCAACCCATTCATGCTC----CGT 1294 Query 127 CGTTCAC----CAGCAGT--GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 |||||| || | | ||||| |||||| |||||||||||| | || |||||||| Sbjct 1293 TGTTCACTTCACACTAATAGGGCACACCTTCTTCCGAAGTTACGGTGTCAATTTGCCGAG 1234 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| || ||||| | | | |||||||| || ||| | | |||| |||||||| Sbjct 1233 TTCCTTCTCCTGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCGCACCAGTGTCGGT 1174 Query 241 TTACGGTA 248 || ||||| Sbjct 1173 TTGCGGTA 1166 >seq2686 Length=327 Score = 82.4 bits (90), Expect = 1e-13 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 169 CATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACC 228 ||||||||||| ||||||||| | ||||| ||| |||||||| ||||||| | | | Sbjct 327 CATTTTGCCGAGTTCCTTAACGAGAGTTCTTCCGCGCGCCTTAGCATTCTCTGCTCGCCT 268 Query 229 ACCTGTGTCGGTTTACGGTA 248 |||||||||||||| ||||| Sbjct 267 ACCTGTGTCGGTTTGCGGTA 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694372170401