Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq2067 105 7e-21 >seq2067 Length=7856 Score = 105 bits (116), Expect = 7e-21 Identities = 125/166 (75%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || | | | |||| Sbjct 6082 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGATAA-CTCTCTCTAAG 6140 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| ||||| Sbjct 6141 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCAAAAA--GGAGG 6198 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| || ||| |||||| |||||||| |||||||||||| || Sbjct 6199 TCGCAGTGACCAGGCCCAGGCGACTGTTTACCAAAAACACAGGTCT 6244 Score = 78.8 bits (86), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTT 80 ||||||| ||||| || || | ||| ||| |||||||||||||| ||| ||| || Sbjct 1169 CGCAAACCGACACTGGTGCGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCA-GGAG 1227 Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT-CCCTA 128 |||||||| |||||| |||| | |||||||||| | || | || ||||| Sbjct 1228 AAGGAACTCGGCAAATTGACACCGTAACTTCGGAAGAAGGTGTGCCCTA 1276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531178710998