Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq2067 401 2e-109 seq3834 123 6e-26 seq770 78.8 2e-12 seq627 73.4 1e-10 >seq2067 Length=7856 Score = 401 bits (444), Expect = 2e-109 Identities = 335/405 (83%), Gaps = 15/405 (4%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 1586 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 1527 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1526 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1467 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | ||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 1466 TAGTTACGGCCGCCGTTTACCGGGGCTTCAATCAAGAGCTT-GC--------ACCCCATC 1416 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 | |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1415 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 1356 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 |||||||||||||||||||||||||||||| || | | | | ||| ||| | | Sbjct 1355 AGTGCTGTGTTTTTAATAAACAGTCGCAGCCACCGATTTTTTGCAACC--CAT--TCATG 1300 Query 313 CGGAGCAAGTC-CTTCACCCTCA-CCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTT 370 | | || |||||| || | ||| |||||||| |||||||||||||| | ||| Sbjct 1299 CTCCGTTGTTCACTTCACACTAATAGGGCACACCTTCTTCCGAAGTTACGGTGTCAATTT 1240 Query 371 GCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 ||| ||||||||| || ||||||||||||||||||| | || ||| Sbjct 1239 GCCGAGTTCCTTCTCCTGAGTTCTCTCAAGCGCCTTAGAATACTC 1195 Score = 279 bits (308), Expect = 1e-72 Identities = 306/411 (74%), Gaps = 27/411 (7%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 6488 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 6429 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6428 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 6369 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | ||||||||||||||||||||||||||| || ||||| | | || | ||| Sbjct 6368 TAGTTACGGCCGCCGTTTACCGGGGCTTCAGTCGCTGGCTTCCCTGTCATCAGGTCACCA 6309 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | ||||||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 6308 ACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 6249 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| | | Sbjct 6248 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACCTCCTT--- 6192 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 || ||| ||| | ||||||||||||||||||| || || Sbjct 6191 TTTGAGGA--------------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 6152 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||||| |||||||| ||||| |||| || ||| ||||||||||||| Sbjct 6151 TTGCCGAGTTCCTTAGAGAGAGTTATCTCGCGCCCCTAGGTATTCTCTACC 6101 >seq3834 Length=649239 Score = 123 bits (136), Expect = 6e-26 Identities = 97/115 (84%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | |||| |||||||||||| | ||||||||||| || ||||| Sbjct 375732 GCATCTTCACGGAGTATTCAGTTTCACTGAGTCCATGTTGGAGACAGCGG-GCAGTCGTT 375790 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 || |||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 375791 ACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGAC 375845 >seq770 Length=8122 Score = 78.8 bits (86), Expect = 2e-12 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 ||||||| ||||||| |||||||||||||||||||||||||||||||| || Sbjct 3999 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTATCT 4049 >seq627 Length=50132 Score = 73.4 bits (80), Expect = 1e-10 Identities = 61/75 (81%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 48 GGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAG 107 || ||||||||||| || || |||| |||||||||||||||| |||| ||||||| Sbjct 43921 GGTTGGAGACAGCGGGGCAGTCTTTACACCATTCGTGCAGGTCGCTGCTTATGCGACAAG 43862 Query 108 GAATTTCGCTACCTT 122 |||||| |||| ||| Sbjct 43861 GAATTTGGCTATCTT 43847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260747840704