Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq2067 369 8e-100 seq3834 100 6e-19 seq770 95.1 3e-17 >seq2067 Length=7856 Score = 369 bits (408), Expect = 8e-100 Identities = 298/353 (84%), Gaps = 8/353 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 6488 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 6429 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6428 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 6369 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACT-GCTTCGAT-TGCTC---TAACA 181 |||||||||||||||||||| ||||||| || || || ||||| | | || | || Sbjct 6368 TAGTTACGGCCGCCGTTTACCGGGGCTTCAG-TCGCTGGCTTCCCTGTCATCAGGTCACC 6310 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 | |||||||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 6309 AACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTT 6250 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT-GTCAT 300 || || ||||||||||||||||||||||||| ||||||| || ||||| ||| | | Sbjct 6249 TGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACCTCCTTTT 6190 Query 301 AGA-CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 6189 TGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 6137 Score = 260 bits (288), Expect = 3e-67 Identities = 287/381 (75%), Gaps = 32/381 (8%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 1586 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 1527 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1526 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1467 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||| ||||||| | | | || |||| | | || | Sbjct 1466 TAGTTACGGCCGCCGTTTACCGGGGCTTCAATCAAGAGC-----TTGC---ACCCCAT-C 1416 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||||||||||||||||||| ||||||| || ||| || || |||| Sbjct 1415 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 1356 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC------TG---- 296 | |||||||||| ||||||||||| || ||| | ||| || || Sbjct 1355 AGTGCTGTGTTTTTAATAAACAGTCGCAGCCACCGATTTTTTGCAACCCATTCATGCTCC 1296 Query 297 -----TCA-TAGACA-------GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCG 343 ||| | ||| ||||| |||||| || ||||||||| |||| ||||||| Sbjct 1295 GTTGTTCACTTCACACTAATAGGGCACACCTTCTTCCGAAGTTACGGTGTCAATTTGCCG 1236 Query 344 AGTTCCTTAACAATAGTTCTC 364 |||||||| | ||||||| Sbjct 1235 AGTTCCTTCTCCTGAGTTCTC 1215 >seq3834 Length=649239 Score = 100 bits (110), Expect = 6e-19 Identities = 92/115 (80%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | || |||||| ||||| || | ||||||| | || ||||| Sbjct 375732 GCATCTTCACGGAGTATTCAGTTTCACTGAGTCCATGTTGGAGACAGCGGGCAG-TCGTT 375790 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 || || ||||||| ||||| ||||| ||||||||||||||||||||||||||| Sbjct 375791 ACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGAC 375845 >seq770 Length=8122 Score = 95.1 bits (104), Expect = 3e-17 Identities = 62/69 (90%), Gaps = 6/69 (9%) Strand=Plus/Plus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 3987 GAGACAGTGCCC------TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 4040 Query 107 TCGCTACCT 115 |||||| || Sbjct 4041 TCGCTATCT 4049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062356048512