Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1451 196 1e-47 seq138 118 3e-24 seq3932 93.3 1e-16 seq3223 80.6 8e-13 seq3792 78.8 3e-12 seq3626 77.0 1e-11 >seq1451 Length=161916 Score = 196 bits (216), Expect = 1e-47 Identities = 185/235 (79%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 268 ACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGA 327 |||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 135444 ACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGG 135385 Query 328 TTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAG 387 |||||||||||||||||||||||| | ||||| || ||| | | | ||| || Sbjct 135384 GCTGGGCTACACACGTGCTACAATGGCAATTACAATTGGAAGCAATGCTGTAAGGCGGAG 135325 Query 388 CAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCT 447 | ||| ||| |||| | || |||||||||||| |||||||||||| | |||||| | Sbjct 135324 CGAAT-CCAGAAAGATTGCCTAAGTTCGGATTGTTCTCTGCAACTCGAGAACATGAAGTT 135266 Query 448 GGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 ||||||||||||||||| ||||||||||| ||||||||| || | || |||| Sbjct 135265 GGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATAAGTACTCGGGCCCT 135211 Score = 154 bits (170), Expect = 4e-35 Identities = 167/216 (77%), Gaps = 23/216 (11%) Strand=Plus/Minus Query 22 CAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACG 81 ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 135893 CAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATTCAACG 135834 Query 82 CGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAG-GTTTCCCCT 140 || | |||||||||| ||||||| | ||| || || | | || ||| Sbjct 135833 CGCAAAACCTTACCAGCCCTTGACA---TATGA-----ATA-----AGTGTGCTTGTCCT 135787 Query 141 T--CGG---GGGAC-AGAGT---GACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTG 191 | ||| || || | | | ||||||| ||||||| ||||||||||||||||| || Sbjct 135786 TAACGGGATGGTACGAAAATTCATACAGGTGTTGCATGGCTGTCGTCAGCTCGTGTCTTG 135727 Query 192 AGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||| |||||||||||||| ||||||||||||||| Sbjct 135726 AGACGTTGGGTTAAGTCCTATAACGAGCGCAACCCT 135691 >seq138 Length=885619 Score = 118 bits (130), Expect = 3e-24 Identities = 159/218 (73%), Gaps = 9/218 (4%) Strand=Plus/Minus Query 268 ACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGA 327 |||| | |||| | || ||||||||||||||| |||||||| || |||| |||||| Sbjct 821534 ACTGTCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGTTCTTATGG 821475 Query 328 TTTGGGCTACACACGTGCTACAATGGA-----CAA-TACAAAGGGCAGCGAAACCGCGAG 381 |||| || ||||||||||||||||| ||| | ||| | ||| | | | || Sbjct 821474 GCTGGGTTAGACACGTGCTACAATGGAAATTGCAATTGCAATTGAAAGCAATGCTGTAAG 821415 Query 382 GTCAAG--CAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTAT 439 || ||| | ||| ||| | | || || | |||||||||| | |||||||||| Sbjct 821414 GTGAAGCTCCAAT-CCAGGATGATGGACTAATTTCGGATTGTTCTTTGCAACTCGAAAGC 821356 Query 440 ATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGC 477 | |||| |||||||||||||||||| ||| ||||||| Sbjct 821355 AGGAAGTTGGAATCGCTAGTAATCGCGGATTAGCATGC 821318 >seq3932 Length=904808 Score = 93.3 bits (102), Expect = 1e-16 Identities = 64/72 (89%), Gaps = 3/72 (4%) Strand=Plus/Plus Query 14 TTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG 73 |||||||||||||||||||| |||| ||| |||||||||||||||||| || |||||| Sbjct 841468 TTGAAACTCAAAGGAATTGATGGGG---CGCGCAAGCGGTGGAGCATGTGATTCAATTCG 841524 Query 74 AAGCAACGCGAA 85 | |||||||||| Sbjct 841525 ATGCAACGCGAA 841536 >seq3223 Length=506217 Score = 80.6 bits (88), Expect = 8e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 || || | |||| | || ||||||||||||||||||||||| || |||| ||||| | Sbjct 130843 GAATGTCAGTGATATACTAGAGGAAGGTGGGGACGACGTCAAGTCCGCATGGCCCTTCGG 130902 Query 327 ATTTGGGCTACACACGTGCTACAATGG 353 ||||||||||||||||||| |||| Sbjct 130903 GGCTGGGCTACACACGTGCTACTATGG 130929 >seq3792 Length=366655 Score = 78.8 bits (86), Expect = 3e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCG 464 |||||||||||||| || |||||||||| || ||||||| ||||||||||||||||| Sbjct 107796 CTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCG 107739 >seq3626 Length=411839 Score = 77.0 bits (84), Expect = 1e-11 Identities = 65/78 (83%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 22 CAAAGGAATT-GACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT--TAATTCGAAGCA 78 |||||||||| ||| ||| || |||||||||||| ||||||||||| |||||||| || Sbjct 43254 CAAAGGAATTTGACAGGGGCCTGCACAAGCGGTGAAGCATGTGGTTTGTAATTCGATTCA 43313 Query 79 ACGCGAAGAACCTTACCA 96 || || ||| | |||||| Sbjct 43314 ACCCGCAGAGCTTTACCA 43331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503937779520