Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq4020 345 7e-93 seq2490 304 2e-80 seq426 190 3e-46 seq3140 172 9e-41 seq3459 78.8 1e-12 >seq4020 Length=382506 Score = 345 bits (382), Expect = 7e-93 Identities = 212/226 (94%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 338062 ACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 338121 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||| Sbjct 338122 CCTGTTATTGCCTCAAACTTCCATTAGCTAAACGCCAATAGTCCCTCTAAGAAGACAGCG 338181 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 | ||||||||||| || |||||||||||||||||||||||||||||| ||||||||| Sbjct 338182 GCTAACCATAGTCGGCCGGTCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAA 338241 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 338242 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 338287 >seq2490 Length=300753 Score = 304 bits (336), Expect = 2e-80 Identities = 226/261 (87%), Gaps = 5/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| | |||| | | | ||||||||||||||||||||||||||||||| Sbjct 247900 ACTCGTTGAGTCCATTTGTGTGACACTCATGCGGCCCAGAACATCTAAGGGCATCACAGA 247959 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| |||||||||||||||||| || Sbjct 247960 CCTGTTATTGCCTCAAACTTCCATCGGCTAGACGCCGATAGTCCCTCTAAGAAGCTGTCC 248019 Query 122 ACCA--ACCATAGTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | || |||| | | |||| |||||||| | ||||||||||||||| ||||| Sbjct 248020 ACAGGGAACA-AGTCCCCGCGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 248078 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 248079 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 248138 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 248139 AGAAAGAGCTCTCAATCTGTC 248159 >seq426 Length=31476 Score = 190 bits (210), Expect = 3e-46 Identities = 113/118 (96%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 4157 GCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACC 4098 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 4097 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAATCTGTC 4040 >seq3140 Length=124309 Score = 172 bits (190), Expect = 9e-41 Identities = 107/115 (93%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 83209 ACTCGTTGAGTCCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 83150 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||||||||||||||||||||||| |||| || ||| |||||||||||||||||| Sbjct 83149 CCTGTTATTGCCTCAAACTTCCATCGGCTAGACGCCGATAGTCCCTCTAAGAAGC 83095 >seq3459 Length=470092 Score = 78.8 bits (86), Expect = 1e-12 Identities = 83/107 (78%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 152 GGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACG 211 |||||| | ||||| | | || |||||| ||||||||||| |||||||||||||||| Sbjct 278316 GGTTAA--TTTCGTTGATAAACGAAATTAAGCAGACAAATCATTCCACCAACTAAGAACA 278259 Query 212 GCCATGCACCACCACCCATAGAATCAAG-AAAGAGCTATCAATCTGT 257 | | |||||||||||| ||| | || |||||| ||||| ||| Sbjct 278258 GTGACTCACCACCACCCACCGAAACCAGTTAAGAGCAGTCAATATGT 278212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796768066497