Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq4020 419 4e-115 seq1400 273 4e-71 seq2226 237 3e-60 seq393 212 1e-52 seq1698 113 8e-23 seq1693 107 3e-21 seq3057 96.9 6e-18 seq864 96.9 6e-18 seq2192 84.2 4e-14 seq2067 84.2 4e-14 >seq4020 Length=382506 Score = 419 bits (464), Expect = 4e-115 Identities = 270/294 (92%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 ||||||| ||||||| |||| |||| || |||||||||||||||||||||||||||||| Sbjct 330075 TACTAAGTTGAATTACTATTGCGGCGCCGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 330134 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| | Sbjct 330135 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTG 330194 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 330195 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 330254 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 330255 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCT 330314 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||| ||| ||||||||||||||||||||| |||||| |||||||||| Sbjct 330315 TCAAATTCCGAAAGACTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 330368 Score = 419 bits (464), Expect = 4e-115 Identities = 270/294 (92%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 ||||||| ||||||| |||| |||| || |||||||||||||||||||||||||||||| Sbjct 333690 TACTAAGTTGAATTACTATTGCGGCGCCGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 333749 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| | Sbjct 333750 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTG 333809 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 333810 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 333869 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 333870 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCT 333929 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||| ||| ||||||||||||||||||||| |||||| |||||||||| Sbjct 333930 TCAAATTCCGAAAGACTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 333983 Score = 156 bits (172), Expect = 7e-36 Identities = 88/89 (99%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 340187 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTCCGAGGGACTAAAGGATCGA 340246 Query 267 TAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||||||||||||||||||||||||| Sbjct 340247 TAGGCCACACTTTCATGGTTTGTATTCAC 340275 >seq1400 Length=722580 Score = 273 bits (302), Expect = 4e-71 Identities = 207/243 (85%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 50 AACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCA 109 || |||| ||| |||| ||| | ||||||||||||| |||||| |||||||||||||||| Sbjct 261501 AATCTGTTTCACGACGATCTTAGCCCAGCTCACGTTTCCTATTGGTGGGTGAACAATCCA 261442 Query 110 ACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 || ||| |||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 261441 ACACTTGGTGAAT-CTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 261383 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGC 229 || || |||||||| |||||||||||||| || | ||||||||| |||||||||||| | Sbjct 261382 AATGTGGCTATGAATGCTTGGCTGCCACACGCTATTTATCCCTGAGGTAACTTTTCTAAC 261323 Query 230 ACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGT 289 ||||||| ||||||| |||| || |||||||||| ||||||| |||||| |||||| Sbjct 261322 GCCTCTAGTTTCAAATTCCGAGAGATTAAAGGATCGCTAGGCCATGCTTTCACAGTTTGT 261263 Query 290 ATT 292 ||| Sbjct 261262 ATT 261260 >seq2226 Length=1142962 Score = 237 bits (262), Expect = 3e-60 Identities = 191/231 (83%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 63 ACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAAT 122 |||||||||||||| |||||||| | |||| |||||||||||||||||| ||| |||| Sbjct 218456 ACGGTCTAAACCCATCTCACGTTTCTTATTGGTGGGTGAACAATCCAACACTTGGTGAAT 218397 Query 123 TCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182 ||| |||| ||||||| |||||| |||||||||| || |||||||||||||| || || Sbjct 218396 TCTACTTCACAATGATAGAAAGAGCTGACATCGAAGTATAAAAAAGCAACGTCGTTACGA 218337 Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242 ||| |||| || ||||||| |||||||| |||| |||| || ||| |||||||||| ||| Sbjct 218336 ACGTTTGGTTGTCACAAGCTAGTTATCCATGTGCTAACGTTCCTGACACCTCTAGCTTCA 218277 Query 243 AATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||| | |||||||||||| ||| | || |||||| ||||||||| Sbjct 218276 AATTTTAAAAGACTAAAGGATCAATAAGTCATGCTTTCACAATTTGTATTC 218226 >seq393 Length=34774 Score = 212 bits (234), Expect = 1e-52 Identities = 169/202 (84%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 ||||||| ||||||| ||| |||| | || ||||||||||| |||||||||| |||| Sbjct 18901 TACTAAGTTGAATTACTTTTGCGGCGCCAAGTAATCAGTAGGGTGAAACTAACCTCTCTC 18842 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||| ||||| |||||||||||||||||| ||| | Sbjct 18841 ACGACGGTCTAAACCCAGCTCACGTTAACTATTGGTGGGTGAACAATCCAACACTTGGTG 18782 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 | |||||||| || |||||||||||| ||||| |||||| ||||| | |||| |||| Sbjct 18781 ACTTCTGCTTTACAATTATAGGAAGAGCCTACATCTAAGGATAAAAAATCGACGTGGCTA 18722 Query 180 TGAACGCTTGGCTGCCACAAGC 201 |||| |||||||||||||| || Sbjct 18721 TGAAAGCTTGGCTGCCACAGGC 18700 >seq1698 Length=101997 Score = 113 bits (124), Expect = 8e-23 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 63 ACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAAT 122 || || ||||||||||| ||||| ||||| ||| | ||||||||||| ||| |||| Sbjct 97405 ACTGTTTAAACCCAGCTGACGTTTACTATTGATGGATTAACAATCCAACACTTGATGAAT 97464 Query 123 TCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182 ||||| || |||||| |||||||| |||| |||||| |||||||||||| |||||| Sbjct 97465 TCTGCATCACAATGATATGAAGAGCCTCCATCAAAGGATATAAAAGCAACGTCACTATGA 97524 Query 183 AC 184 || Sbjct 97525 AC 97526 >seq1693 Length=17687 Score = 107 bits (118), Expect = 3e-21 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| | ||||| |||||||||||| |||| | |||| | | | ||||| Sbjct 4093 GAATTCTGCTTCACAAAGATAGAAAGAGCCGACATAAAAGGGTAAAAATGTAGCCTCGCT 4152 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 ||||| |||| | ||||||||||||| ||| || |||||| |||||||| || Sbjct 4153 ATGAAGGCTTTGTTGCCACAAGCCAGCTATTCCCGTGGTAGCTTTTCTGACA 4204 >seq3057 Length=243169 Score = 96.9 bits (106), Expect = 6e-18 Identities = 164/239 (69%), Gaps = 23/239 (10%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||| ||| | |||||||||| || || | |||||| | ||||||| | || Sbjct 240490 GTCATCAAAAGGATTAAACTAACCTATCCCACAAAGGTCTAGATATAGCTCACATAATCT 240431 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||| || ||||||||||||| || |||||| ||| |||||| ||||| | Sbjct 240430 ATTGATGAATGAACAATCCAACATTTGATAAATTCTACTTTACAATGATAAGAAGA--AG 240373 Query 150 ACA---TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA---------- 196 | | ||||||||||| |||||||||| |||| || | |||||||||| Sbjct 240372 AAAGTTTCGAAGGATCATAAAGCAACGTTGCTA-AAATGTTTGGCTGCCACTTAGCTTCA 240314 Query 197 -------CAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC 248 | ||| ||| | |||||||| |||| | |||||||||| ||||||||| Sbjct 240313 CAGTCGCCTAGCTTGTTGTTGATGTGGTAATTTTTTTCACACCTCTAGCTTCAAATTTC 240255 >seq864 Length=906695 Score = 96.9 bits (106), Expect = 6e-18 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 141 GAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG 200 ||||||| ||||| || |||| | || | |||||||| ||| ||||||| || |||||| Sbjct 250867 GAAGAGCTGACATAGAGGGATAATAAGGAAACGTCGCCTTGACCGCTTGGATGGCACAAG 250808 Query 201 CCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT 246 |||||| |||||||||| |||| || ||| ||| || ||||||| Sbjct 250807 CCAGTTCTCCCTGTGGTGACTTCCTTGACACTTCTGGCTTCAAATT 250762 >seq2192 Length=331140 Score = 84.2 bits (92), Expect = 4e-14 Identities = 85/112 (76%), Gaps = 13/112 (12%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| ||||||| ||||| || |||| | ||| ||||| Sbjct 11018 GAATTCTGCTTCACAATGATAGAAAGAGT--------AA-----AAAATGTAACCTCGCT 11064 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 ||||| |||||||||||||||||||||||| ||||||||| |||| || || Sbjct 11065 ATGAAAGCTTGGCTGCCACAAGCCAGTTATTCCTGTGGTAGATTTTTTGACA 11116 >seq2067 Length=7856 Score = 84.2 bits (92), Expect = 4e-14 Identities = 128/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || |||||||| |||| | |||||||||||||||| || ||| || ||||| Sbjct 7062 ACCAAACTGTCTCACGACGTTTTAAACCCAGCTCACGTACCTCTTTAAATGGCGAACAGC 7003 Query 107 CCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 | || ||| |||| | | || | | |||| || ||||||||||||| | || Sbjct 7002 CATACCCTTGGGACCGGCTACAGCCCCAGGATGA---GATGAGCCGACATCGAGGTGCCA 6946 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 || | | ||||| ||||||| ||||| | | |||| ||||||||| |||||||| Sbjct 6945 AACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCTAGAGTAACTTT 6886 Query 224 T 224 | Sbjct 6885 T 6885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854364653472