Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1660 244 2e-62 seq1294 190 4e-46 seq626 96.9 7e-18 seq794 93.3 9e-17 seq3838 89.7 1e-15 seq2930 82.4 2e-13 seq400 80.6 6e-13 seq1415 75.2 2e-11 >seq1660 Length=229051 Score = 244 bits (270), Expect = 2e-62 Identities = 243/309 (79%), Gaps = 18/309 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 213793 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 213735 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 ||||| |||||||| |||||||||||| |||||||| ||||||||||||||||||||| | Sbjct 213734 CCGTAAGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCT 213675 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || ||||||||||||||| ||| ||||||||||||||||||||||| ||| | || | | Sbjct 213674 ACTGATCGTCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCAAGCCCCT 213615 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268 | ||| || || ||| |||| | | | | | |||| ||||||||| Sbjct 213614 C-CTTAG-GC----------GGATTCCTCCTTTTGCTCCTCAG-CCTATGGGGTATTAGC 213568 Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326 |||||||| ||| ||||| || ||| ||||| ||| || || ||||||||||| Sbjct 213567 AACCGTTTCCAGCTGTTGTCCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 213510 Query 327 TCCGCCGCT 335 |||||| || Sbjct 213509 TCCGCCACT 213501 >seq1294 Length=413606 Score = 190 bits (210), Expect = 4e-46 Identities = 144/170 (85%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| ||| |||||||||||||| || |||||||||||||||||| Sbjct 6059 CACGCGGCATTGCTCCCGTCAAGCTTTCGCCCATTGCTGAAAATTCCCCACTGCTGCCTC 6000 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 ||||| |||||| | |||||||||||| ||||||| || |||||| ||||||||||| | Sbjct 5999 CCGTAAGAGTCTAGGCCGTGTCTCAGTCGCAGTGTGGCTCATCATCTTCTCAGACCAGCT 5940 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || ||| ||||||||||| ||| ||||||||||||| ||||||||| ||| Sbjct 5939 ACTGATTGTCGCCTTGGTAAGCTATTACCTCACCAAATAGCTAATCAGAC 5890 >seq626 Length=562574 Score = 96.9 bits (106), Expect = 7e-18 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 53 TTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTC 112 |||| |||||| || | | ||||||||| ||||| |||||| | ||||||| Sbjct 250395 TTTCAACCATTGCAAAAAAATTCCCACTGCTATCTCCCAACAGAGTCTAGGTCGTGTCTG 250336 Query 113 AGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCA 172 ||| |||||||| |||||||||||||||| || | || || |||||||| ||| | Sbjct 250335 AGTCCCAGTGTGGCTGATCATCCTCTCAGGACAACAATTGAAGGTTGCCTTGGTAAGCTA 250276 Query 173 TTACCTCACCAACTAGCTAATCC 195 |||| ||| || ||| ||||||| Sbjct 250275 TTACATCATCATCTATCTAATCC 250253 >seq794 Length=606274 Score = 93.3 bits (102), Expect = 9e-17 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 39 TGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGT 98 ||||||||| | ||||||||||||||||||| ||| |||||||| || ||| || | ||| Sbjct 227745 TGGCTGGATAAAGCTTTCGCCCATTGTCCAACATTGCCCACTGCAGCATCCAGTGGAAGT 227804 Query 99 CTGG--ACCGTGTCTCAGTTCCAGTGTG 124 |||| |||||||||||| |||| ||| Sbjct 227805 CTGGGAGCCGTGTCTCAGTCCCAGCGTG 227832 >seq3838 Length=746898 Score = 89.7 bits (98), Expect = 1e-15 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| | |||||||||||||||||| ||| |||| ||||||||||||| Sbjct 69642 CACGCGGCATTGATCCG-TCAGGCTTTCGCCCATTGCGCAAAATTCGCCACTGCTGCCTC 69700 Query 89 CCGTAGGAGTCTGGACCGTGT 109 | ||| |||||||| |||||| Sbjct 69701 CAGTAAGAGTCTGGGCCGTGT 69721 >seq2930 Length=380656 Score = 82.4 bits (90), Expect = 2e-13 Identities = 92/122 (75%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 88 CCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGT 147 ||||| | |||||||||||||||||| ||||||| | | |||| |||| |||||| | Sbjct 65484 CCCGTGGATGTCTGGACCGTGTCTCAG-TCCAGTGCGGCGGATCGTCCTAACAGACCCGC 65426 Query 148 TACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCA 207 || | || | | |||||| || | |||||| || ||||| || || | |||||||| Sbjct 65425 TAAGCGTCCTTGGCTTGGTCAGTCTTTACCTAACGAACTACCTGATGCTTTGTAGGCTCA 65366 Query 208 TC 209 || Sbjct 65365 TC 65364 >seq400 Length=476376 Score = 80.6 bits (88), Expect = 6e-13 Identities = 70/85 (82%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 113 AGTT-CCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCC 171 |||| ||||||| ||||||||||||||||||||| ||| |||||||||||| || | | Sbjct 159676 AGTTACCAGTGTTGCTGATCATCCTCTCAGACCAGGTACTGATCGTCGCCTTCGTAATCT 159617 Query 172 ATT---ACCTCACCAACTAGCTAAT 193 || ||||| |||||||| |||| Sbjct 159616 TTTACAACCTCCCCAACTAGGTAAT 159592 >seq1415 Length=118310 Score = 75.2 bits (82), Expect = 2e-11 Identities = 78/100 (78%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 23 TTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGC 82 ||||| | ||| ||| | |||||||| | |||| ||||||||||| |||||||||||| Sbjct 902 TTCACTCCCGCCACATAG-CTGGATCAAGTATTCGACCATTGTCCAACATTCCCCACTGC 960 Query 83 TGCCTCCCGTAGGAGTCT--GGACCGTGTCTCAGTTCCAG 120 ||||| || | ||||| || | |||||| ||| |||| Sbjct 961 AGCCTCGAGTGGAAGTCTGGGGGCGGTGTCTTAGTCCCAG 1000 Score = 73.4 bits (80), Expect = 8e-11 Identities = 66/82 (80%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 ||||||||| |||||| |||| ||||||| |||||||||||| | ||| || | ||||| Sbjct 6601 GCTGGATCAAGCTTTCACCCACTGTCCAACATTCCCCACTGCAGACTCGAGTGGAAGTCT 6660 Query 101 --GGACCGTGTCTCAGTTCCAG 120 || | |||||| ||| |||| Sbjct 6661 GGGGGCGGTGTCTTAGTCCCAG 6682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071955651360