Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq2528 327 4e-87 seq2067 304 5e-80 seq2633 241 5e-61 seq2722 98.7 4e-18 seq4034 80.6 1e-12 >seq2528 Length=1346 Score = 327 bits (362), Expect = 4e-87 Identities = 407/550 (74%), Gaps = 18/550 (3%) Strand=Plus/Plus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTG-GGCCCCCTAGACCATCCAGTGCT 111 ||||||||||||||| ||| |||||||| | || || ||||||| ||| ||||||| Sbjct 564 GGCATTCGGAGTTTGACTGAATTCGGTAACCCGATGAGGGCCCCTAGTCCAATCAGTGCT 623 Query 112 CTACCTCCGGGAAGAA-ACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCT 170 |||||||| || | || ||| ||| |||||| ||||||||||||||||||| Sbjct 624 CTACCTCCACGACTCTCATACTCGAGGCTAGCCCTAAAGCTATTTCGGGGAGAACCAGCT 683 Query 171 ATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACC 230 ||| | |||| |||||| |||| || ||| ||||| |||||||| || |||||||| Sbjct 684 ATCTCCGAGTTCGATTGGAATTTCTCCGCTACCCACACCTCATCCCCGCACTTTTCAACG 743 Query 231 TAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATC 290 | |||||||||| |||||| | || ||||| | ||||| |||| ||||| |||||| Sbjct 744 TGCGTGGGTTCGGGCCTCCATTCAGTGTTACCTGAACTTCACCCTGGACATGGGTAGATC 803 Query 291 ACTTCGCTTCGGGTCT-TGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTA 349 || | | ||||||||| || | | ||| | |||||||||| |||||||||||||| Sbjct 804 ACCTGGTTTCGGGTCTACGACCACG-TACTAAATCGCCCTATTCAGACTCGCTTTCGCTG 862 Query 350 CGGCTACCCCAC-ACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408 ||||| | | | | ||||||| || || | ||||||| || ||||||| || Sbjct 863 CGGCTCCGTCTCTTCAACTTAACCTTGC-ACGGGATCGTAACTCGCCGGTTCATTCTACA 921 Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468 ||||||||||| ||||| | | || || |||| ||| ||||| || || Sbjct 922 AAAGGCACGCCATCACC-----CATTAACGG-------GCTCTGACTTCTTGTAAGCGCA 969 Query 469 TGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTAC 528 |||||||||| || ||||||||| | | | ||| |||||||||||||||||||||||| Sbjct 970 CGGTTTCAGGTTCTTTTTCACTCCGCTTCCGCGGTGCTTTTCACCTTTCCCTCACGGTAC 1029 Query 529 TTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCAC 588 | | | ||||||||||| | ||||||||||| ||| | |||||| || | ||| Sbjct 1030 TGCTTCACTATCGGTCACTAGGGAGTATTTAGCCTTGGGAGATGGTCCTCCCTGCTTCCG 1089 Query 589 ACGAAATTTC 598 ||| ||||| Sbjct 1090 ACGGGATTTC 1099 >seq2067 Length=7856 Score = 304 bits (336), Expect = 5e-80 Identities = 384/514 (75%), Gaps = 24/514 (5%) Strand=Plus/Minus Query 52 CGGCATTCGGAGTTTGG-TTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTG 109 ||| |||||||||||| ||| ||| |||||| | | |||||||| | | ||||| Sbjct 493 CGGTATTCGGAGTTTGCCTTGGTTT-GGTAAGTCGCCATGACCCCCTAGCCAAAACAGTG 435 Query 110 CTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGC 169 ||||||| ||| | | || || || || |||||||| |||||| |||||||||| Sbjct 434 CTCTACCCCCGA-AGGTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGAACCAGC 376 Query 170 TATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT-CAA 228 ||| | ||||||| || ||||||||||||||||||||| |||||| || |||||| ||| Sbjct 375 TATTTCCAAGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCGCT-AGTTTTGCAA 317 Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288 | ||| ||||||| |||||| || ||||| ||||| |||| || || |||| Sbjct 316 CACTAGTCGGTTCGGGCCTCCAGTGCGTGTTACCGCACCTTCACCCTGGACAGGGGTAGA 257 Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 |||| | ||||||||| | | || ||| || ||||||||||||||||| |||| || Sbjct 256 TCACACGGTTTCGGGTCTACACCCAGCGACTGAT-CGCCCTATTCGGACTCGATTTCTCT 198 Query 349 ACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408 |||||| ||| | | ||||||||| || || || | || |||| | | |||| | || Sbjct 197 ACGGCTTCCCTATTC-GGTTAACCTTGCCACTGAATG-TAAGTCGCTGACCCATTATACA 140 Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468 ||||| |||| ||||| ||| || ||||| || ||||| ||||| Sbjct 139 AAAGGTACGCAGTCAC------CCT----TGC----GGGCTCCTACTTTTTGTAAGCACA 94 Query 469 TGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTAC 528 ||||||||| || ||||||||||| | ||||| |||||||||||||||||||||||| Sbjct 93 CGGTTTCAGGATCT-TTTCACTCCCCTTCCGGGGTGCTTTTCACCTTTCCCTCACGGTAC 35 Query 529 TTGTCCGCTATCGGTCACCAAGGAGTATTTAGGC 562 | || | |||||||||| || | ||||||||||| Sbjct 34 TGGTTCACTATCGGTCATCAGGTAGTATTTAGGC 1 Score = 280 bits (310), Expect = 5e-73 Identities = 347/470 (74%), Gaps = 26/470 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 5276 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 5217 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 5216 CCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 5157 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 5156 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 5097 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | |||||| |||||||||||||||||||| || || |||| Sbjct 5096 ACAAT----TGCCCTAAGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGCTCCCTTAA 5044 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | || |||| |||||||||||||| |||||||| |||| Sbjct 5043 CCAGGC--CACTGCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA------ 4992 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 | | || ||| |||| || | ||| || | ||||||| || ||||||||| Sbjct 4991 ----GAGATTCAATTCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 4936 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||||||||||||||||||| | |||||||||||||| | Sbjct 4935 TCCCCGATGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 4876 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| |||| |||||||| | |||||||||| ||| || Sbjct 4875 GGAGTATTTAGCCTTACAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 4826 >seq2633 Length=346445 Score = 241 bits (266), Expect = 5e-61 Identities = 313/428 (73%), Gaps = 26/428 (6%) Strand=Plus/Plus Query 179 GTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGG 238 ||| || |||| ||||||||||| ||||| |||||| || | |||||||| | ||| || Sbjct 28965 GTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGG 29024 Query 239 TTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCT 298 ||||| ||||||| || | |||| |||||| |||| |||||||||||||| | | Sbjct 29025 TTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGT 29084 Query 299 TCGGGTCT-TGATC-GTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC 356 ||||||| | | | ||| || | |||||| |||||||||||||||||||| | Sbjct 29085 TCGGGTCCATAAGCAGTGACAATT----GCCCTAAGAAGACTCGCTTTCGCTACGGCTCC 29140 Query 357 CC----CACACGGGTTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAA 411 | | | |||||| || ||| | | || |||| |||||||||||||| | Sbjct 29141 GGTGGGCTCCC---TTAACCAGGC--CACTGCCTATAAGTCGCCGGCTCATTCTTCAACA 29195 Query 412 GGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGG 471 ||||||| |||| | | || ||| |||| || | ||| || | || Sbjct 29196 GGCACGCGGTCAG----------AGATTCAATTCTCCTCCCACTGCTTGGGAGCTTACGG 29245 Query 472 TTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTG 531 ||||| || ||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 29246 TTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCTTTCCCTCACGGTACTAC 29305 Query 532 TCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACG 591 | |||||||||||||| |||||||||||| |||| |||||||| | |||||||||| Sbjct 29306 TTCGCTATCGGTCACCCAGGAGTATTTAGCCTTACAAGGTGGTCCTTGCTGATTCACACG 29365 Query 592 AAATTTCA 599 ||| || Sbjct 29366 GGATTCCA 29373 >seq2722 Length=729857 Score = 98.7 bits (108), Expect = 4e-18 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 468 ATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTA 527 ||| | ||| || |||||||||| | | | | |||||||||||| ||||||||| Sbjct 705675 ATGTTATCATGTTCTATTTCACTTCTTGATGGAAATTCTTTTCACCTTTTACTCACGGTA 705734 Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 ||| | || ||||||||||| |||||||||||| |||| |||||||| | |||||| Sbjct 705735 CTTCTTCGGTATCGGTCACCTAGGAGTATTTAGCCTTACAAGGTGGTCCTTGCTGATTCA 705794 Query 588 CACGAAATTTCA 599 |||| ||| || Sbjct 705795 CACGGGATTCCA 705806 >seq4034 Length=259693 Score = 80.6 bits (88), Expect = 1e-12 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 507 TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 |||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| Sbjct 252960 TTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 253018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817524805888