Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2067 329 8e-88 seq2633 232 2e-58 seq2528 230 6e-58 seq2722 78.8 2e-12 >seq2067 Length=7856 Score = 329 bits (364), Expect = 8e-88 Identities = 300/361 (83%), Gaps = 17/361 (5%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| |||||| |||| |||| |||||||||||| |||||||| | Sbjct 347 CCTATCCACAGCTCAT-CCGCTAG-TTTTGCAACACTAGTCGGTTCGGGCCTCCAGTGCG 290 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | |||||| ||||| || |||| || || |||||| | |||||| |||||||| | Sbjct 289 T-GTTACCGCACCTT-CACCCTGGACAGGGG-TAGATCACACGGTTT-CGGGTCTACA-C 235 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||||||| ||||||| | |||||| ||| | ||||| || |||||||||||||| Sbjct 234 CCAGCGACTGATCGCCCTATTCGGACTCGATTT-CTCTACGGCTTCCCTATTCGGTTAAC 176 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 175 CTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC----T 121 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 | ||||||| ||| ||||| ||| ||||||||||||||| |||||||||||| ||||| Sbjct 120 TGCGGGCTCCTACTTTTTGTAAGCACACGGTTTCAGGATCT-TTTCACTCCCCT-TCCGG 63 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCA-GTAGTATTTA 362 ||| |||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||| Sbjct 62 GGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCA-TCAGGTAGTATTTA 4 Query 363 G 363 | Sbjct 3 G 3 Score = 232 bits (256), Expect = 2e-58 Identities = 309/414 (75%), Gaps = 13/414 (3%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| | Sbjct 5210 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 5154 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 5153 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 5098 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTAT--TCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | || |||| | Sbjct 5097 GACAATT-GCCCTAAGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGCTCCCTTAACCAG 5040 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| ||||||||| | | |||| | ||| ||| |||| |||| | || | Sbjct 5039 -GCCACTGCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATTCAATT 4981 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || |||||||||| | ||||||||||||||| | ||||| Sbjct 4980 CTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGT 4922 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| ||||||||||||||||||| ||| |||||||||| ||| |||||||||||| Sbjct 4921 TCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCT 4862 Query 367 TGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 4861 TACAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 4808 >seq2633 Length=346445 Score = 232 bits (256), Expect = 2e-58 Identities = 309/414 (75%), Gaps = 13/414 (3%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| | Sbjct 28989 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 29045 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 29046 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 29101 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTAT--TCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | || |||| | Sbjct 29102 GACAATT-GCCCTAAGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGCTCCCTTAACCAG 29159 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| ||||||||| | | |||| | ||| ||| |||| |||| | || | Sbjct 29160 -GCCACTGCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATTCAATT 29218 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || |||||||||| | ||||||||||||||| | ||||| Sbjct 29219 CTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGT 29277 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| ||||||||||||||||||| ||| |||||||||| ||| |||||||||||| Sbjct 29278 TCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCT 29337 Query 367 TGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 29338 TACAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 29391 >seq2528 Length=1346 Score = 230 bits (254), Expect = 6e-58 Identities = 294/392 (75%), Gaps = 11/392 (3%) Strand=Plus/Plus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 ||||||||| || ||||||| |||||| | ||| |||||| | ||| || |||| | Sbjct 735 TTTTCAACGTGCGTGGGTTCGGGCCTCCATTCAGT-GTTACCTGAACTT-CACCCTGGAC 792 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGA-CGCCCTAGTAAGA 148 || || |||||| || ||||| |||||||| || | |||| | ||||||| | ||| Sbjct 793 ATGGG-TAGATCACCTGGTTT-CGGGTCTACGACCACGT-ACTAAATCGCCCTATTCAGA 849 Query 149 CTCGCTTTTCGCTACGCCTCCC-CTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCT 207 |||||||| |||| || |||| || ||| | | | |||| || ||| |||| Sbjct 850 CTCGCTTT-CGCTGCGGCTCCGTCTCTTCAACTTAACCTTGCACGGGATCGTAACTCGCC 908 Query 208 GACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGC 267 | |||| ||||||||| |||| ||||||| || | ||||| ||| |||||| || Sbjct 909 GGTTCATTCTACAAAAGGCACGCCATCACCCATTAACG--GGCTCTGACTTCTTGTAAGC 966 Query 268 ATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACG 327 ||||||||||| ||| ||||||||| || |||| ||| |||||| ||||||||||||| Sbjct 967 GCACGGTTTCAGGTTCTTTTTCACTCCGCT-TCCGCGGTGCTTTTCACCTTTCCCTCACG 1025 Query 328 GTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATAT 387 ||||| |||||||||||||| | | ||||||||||||||| |||||||| ||| | Sbjct 1026 GTACTGCTTCACTATCGGTCACTAGGGAGTATTTAGCCTTGGGAGATGGTCCTCCCTGCT 1085 Query 388 TCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 || ||| ||||||||| ||| | ||||| Sbjct 1086 TCCGACGGGATTTCTCGTGTCCCGCCGTACTC 1117 >seq2722 Length=729857 Score = 78.8 bits (86), Expect = 2e-12 Identities = 120/170 (71%), Gaps = 7/170 (4%) Strand=Plus/Plus Query 254 CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG---TTCTT 310 ||||||||| || || | | ||| | ||||||||||| ||| || ||||| Sbjct 705659 CACTGCTTGGGAGCTTATGTTATCATGTTCTATTTCACT----TCTTGATGGAAATTCTT 705714 Query 311 TTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 ||| ||||| ||||||||||| ||| ||||||||| || ||||||||||||| | Sbjct 705715 TTCACCTTTTACTCACGGTACTTCTTCGGTATCGGTCACCTAGGAGTATTTAGCCTTACA 705774 Query 371 GGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 705775 AGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 705824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241548635008