Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq4020 104 1e-20 seq2490 75.2 7e-12 >seq4020 Length=382506 Score = 104 bits (114), Expect = 1e-20 Identities = 94/112 (84%), Gaps = 6/112 (5%) Strand=Plus/Plus Query 13 CCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTA 72 ||||| ||||| ||| | ||| || || ||| |||||||||||||| || |||||| Sbjct 337844 CCGTT-GCCGGCTCCCGGACGCCGATCCC--AAGGGCTCACTAAGCCATT-CAATCGGTA 337899 Query 73 GTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||| ||||| ||||| |||||||||||||||||||||||| ||||||||||| Sbjct 337900 GTA-GCGACAGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCAAGCT 337949 >seq2490 Length=300753 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 247727 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 247784 Query 122 GCT 124 ||| Sbjct 247785 GCT 247787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300788333660