Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1660 228 2e-57 seq1294 156 8e-36 seq3838 78.8 2e-12 seq794 77.0 6e-12 >seq1660 Length=229051 Score = 228 bits (252), Expect = 2e-57 Identities = 235/305 (77%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||| Sbjct 213788 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAA 213729 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 213728 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 213669 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||| ||||||| ||||||||||| |||||| | ||| ||||| || || Sbjct 213668 CGTCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCAAGCCCCTCCTTAG 213609 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | |||| ||||||||| Sbjct 213608 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TATGGGGTATTAGCAAC 213565 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| | || ||| || |||||||| || ||| |||||||||||||||| Sbjct 213564 CGTTTCCAGCTGTTGTCCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 213506 Query 300 CCACT 304 ||||| Sbjct 213505 CCACT 213501 >seq1294 Length=413606 Score = 156 bits (172), Expect = 8e-36 Identities = 134/166 (81%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||| | |||| ||||||| || || |||||||||||||||||||| |||||| ||||| Sbjct 6041 TCAAGCTTTCGCCCATTGCTGAAAATTCCCCACTGCTGCCTCCCGTAAGAGTCTAGGCCG 5982 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 |||||||||| || |||||| ||| | |||||| || ||||| ||| |||| |||||| Sbjct 5981 TGTCTCAGTCGCAGTGTGGCTCATCATCTTCTCAGACCAGCTACTGATTGTCGCCTTGGT 5922 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178 ||||||| |||||||| || |||||| | ||| ||||| || || Sbjct 5921 AAGCTATTACCTCACCAAATAGCTAATCAGACGCAAGCCCCTCCTT 5876 >seq3838 Length=746898 Score = 78.8 bits (86), Expect = 2e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| |||| || | |||||||||||||| ||| |||||||||||| Sbjct 69659 TCAGGCTTTCGCCCATTGCGCAAAATTCGCCACTGCTGCCTCCAGTAAGAGTCTGGGCCG 69718 Query 73 TGT 75 ||| Sbjct 69719 TGT 69721 >seq794 Length=606274 Score = 77.0 bits (84), Expect = 6e-12 Identities = 72/91 (79%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| || | | |||| |||||||| ||| || |||||||| || ||| || | ||||| Sbjct 227747 GCTGGATAAAGCTTTCGCCCATTGTCCAACATTGCCCACTGCAGCATCCAGTGGAAGTCT 227806 Query 67 GGG--CCGTGTCTCAGTCCCAATGTGGCCGT 95 ||| |||||||||||||||| ||||| || Sbjct 227807 GGGAGCCGTGTCTCAGTCCCAGCGTGGCAGT 227837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998358696192