Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq2528 293 5e-77 seq2067 208 2e-51 >seq2528 Length=1346 Score = 293 bits (324), Expect = 5e-77 Identities = 314/408 (77%), Gaps = 18/408 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||||||| |||| | || ||| | | | | Sbjct 114 CGACTACGCCTTTCGGCCTCGCCTTAGGTCCCGACTTACCCTGAGCGGACGAGCCTTCCT 173 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||| | ||||||||| ||||| ||| ||| || ||||||| || Sbjct 174 CAGGAACCCTTAGGCTTTCGGCGGACAAGATTCTCACTTGTCTTTTCGTTACTCATACCG 233 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGA 179 ||||||||||| | || |||||||| | | || ||||||| | | | | Sbjct 234 GCATTCTCACTTGAATGCGCTCCACCAGTCCTT-ACGGTCTAGCTTCAACGCCCTTAGAA 292 Query 180 CGCTCCCCTACCC--------AACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 ||||| |||||| || ||| || |||||||||||| | ||| || || Sbjct 293 CGCTCTCCTACCACTGTTCGTAAGAACA---GT--CCACAGCTTCGGTG-ATACGTTTAG 346 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| |||||| ||||||| || ||||| |||||||||||||||||||||||||| || Sbjct 347 CCCCGGTACATTTTCGGCGCAGAGTCACTCGACCAGTGAGCTATTACGCACTCTTTAAAT 406 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 407 GGTGGCTGCTTCTAAGCCAACATCCTGGTTGTCTTAGCAACTCCACATCCTTTCCCACTT 466 Query 352 AGTCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | ||| ||||| ||| |||||||||||| |||||||||||||||||| Sbjct 467 A-ACACACACTTGGGGACCTTAGCTGATGGTCTGGGCTGTTTCCCTCT 513 >seq2067 Length=7856 Score = 208 bits (230), Expect = 2e-51 Identities = 299/410 (73%), Gaps = 20/410 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 5828 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 5769 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 5768 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 5709 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || |||| | | ||||| || || | | Sbjct 5708 ACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTCACGCTGATGCTTCTCC-CTAAGGC 5653 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | | ||| | ||||||||||||| || |||| Sbjct 5652 GGAACGCTCCCCTACCGATGTATTTTGACA---TCCCACAGCTTCGGCAGACCGCTTAGT 5596 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||| | ||| ||||||| | | ||||| ||||||||||||||||||||||||||| Sbjct 5595 CCCA--TTCATCTTCGGCGCAAGAGCGCTTGATCAGTGAGCTATTACGCACTCTTTCAAG 5538 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCACT 350 | |||||||||| | || |||||||||| ||||| ||| |||| || |||||| ||||| Sbjct 5537 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCA-CTCCTACCTCCTTTACCACT 5479 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| |||||||||||||| |||||||| Sbjct 5478 TAGCGGTCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTCCCCTCTCG 5429 Score = 170 bits (188), Expect = 5e-40 Identities = 291/408 (71%), Gaps = 22/408 (5%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||| | || || ||| | | | Sbjct 941 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACTCTACGCCGATGAACGTTGCGTAG 882 Query 64 GAACCCTTG-GATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCTGC 121 || ||||| | | | ||||| ||| || ||||| | |||||||||||| | || Sbjct 881 AAAACCTTGCGCTTA-CGGCGAGGGGGCTTTTCACCCCCTTTAACGCTACTCATGTCAGC 823 Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179 |||| |||| | || | ||||| ||| | | || ||| |||||| || ||| | Sbjct 822 ATTCGCACTTCTGAT-ACCTCCAGCACGCTTT-ACAACGCACCTTCACAGGCTTACAGAA 765 Query 180 CGCTCCCCTACC-CAACCACACAGGTTGCCA-----CAGCTTCGGCGGATAACT---TAA 230 ||||| |||||| | || | | |||| | ||||||||| ||||| | | Sbjct 764 CGCTCTCCTACCACTTGCA-ATAAATTGCAAATCCGCAGCTTCGG----TAACTGGCTTA 710 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| ||||| || |||| | | ||| |||||||||||||||||||||||||| || Sbjct 709 GCCCCGTTACATCTTCCGCGCAGGACGACTCGACCAGTGAGCTATTACGCACTCTTTAAA 650 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 | |||||||||| |||||||| ||||| ||| | || |||| || ||||||||| Sbjct 649 TGGTGGCTGCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACT 590 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || || |||||| ||||||||| | |||||| ||||||||||| Sbjct 589 TAGCCA-ATTTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177551282688