Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1451 129 5e-28 seq138 84.2 2e-14 seq3223 82.4 6e-14 seq2093 80.6 2e-13 >seq1451 Length=161916 Score = 129 bits (142), Expect = 5e-28 Identities = 126/161 (78%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||| |||||||| ||| | | |||||||| ||| ||||| ||| | Sbjct 135278 TCGAGTTGCAGAGAACAATCCGAACTTAGGCAATCTTTCTGG-ATTCGCTCCGCCTTACA 135336 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || || |||| | |||||||| ||||||| ||||| ||||||||||||| Sbjct 135337 GCATTGCTTCCAATTGTAATTGCCATTGTAGCACGTGTGTAGCCCAGCCCATAAGGGCCA 135396 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || |||||||||||||||||||||||||||| || | |||| Sbjct 135397 TGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 135437 >seq138 Length=885619 Score = 84.2 bits (92), Expect = 2e-14 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| |||||| | ||| |||||||| ||||| ||||||||||||||||||| Sbjct 821449 CCATTGTAGCACGTGTCTAACCCAGCCCATAAGAACCATGCGGACTTGACGTCATCCCCA 821508 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||| || | |||| Sbjct 821509 CCTTCCTCCAGTATATCAC 821527 >seq3223 Length=506217 Score = 82.4 bits (90), Expect = 6e-14 Identities = 74/92 (80%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 72 CTCTGTA--TGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTT 129 ||||||| || |||| ||| ||||||| ||||| ||| |||||||||| |||||| Sbjct 130942 CTCTGTAGTTGGGCCATAGTAGCACGTGTGTAGCCCAGCCCCGAAGGGCCATGCGGACTT 130883 Query 130 GACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||| |||||||||||||| || | |||| Sbjct 130882 GACGTCGTCCCCACCTTCCTCTAGTATATCAC 130851 >seq2093 Length=607760 Score = 80.6 bits (88), Expect = 2e-13 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 108 CCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||| |||||||||||||||||||||||||||| || | |||| Sbjct 282934 CCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 282987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415983327890