Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq2067 271 1e-70 seq2337 201 2e-49 >seq2067 Length=7856 Score = 271 bits (300), Expect = 1e-70 Identities = 226/275 (82%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||| |||||| |||||| ||| |||| ||| ||||| Sbjct 2326 GAGGTGGGCTTCCTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAG 2267 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||| Sbjct 2266 CGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTA 2207 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| Sbjct 2206 CTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCA 2147 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || Sbjct 2146 CGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAAC 2087 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | |||||||| | || |||||||||||| Sbjct 2086 GTACTACCGCCCCAGGTGGCGAAGAGCCGACATCG 2052 Score = 248 bits (274), Expect = 1e-63 Identities = 213/261 (82%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| |||||| |||||||| | | || |||| |||| Sbjct 7213 GCTTAGATGCTTTCAGCGGTTATCTCTTCCACACTTAGCTACTCGGCAATGCCACTGGCG 7154 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG-CTCC 134 ||||| | | |||||||||| |||||| ||||||||||||||||| | ||| || | Sbjct 7153 TGACAACCGATACACCAGAGGTGTGTCCACTCCGGTCCTCTCGTACTAGGAGCAGGCTTC 7094 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 ||||||| | | |||||||| |||||||||| ||||||||| ||||||| | |||| Sbjct 7093 -CTCAAATCTGCAGCGCCCACGGAAGATAGGGACCAAACTGTCTCACGACGTTTTAAACC 7035 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 |||||| ||| ||||||||| ||||||||||| |||||||||||| || |||||||| Sbjct 7034 CAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGCCCCA 6975 Query 255 GGATGAGACGAGCCGACATCG 275 |||||||| |||||||||||| Sbjct 6974 GGATGAGATGAGCCGACATCG 6954 >seq2337 Length=105521 Score = 201 bits (222), Expect = 2e-49 Identities = 196/251 (78%), Gaps = 1/251 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||| |||| |||||| |||||| ||| |||| ||| ||||| Sbjct 33601 GAGGTGGGCTTCCTACTTCGATGATTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAG 33660 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | | |||| | ||||||| |||||||||| ||| |||||||||||| ||| Sbjct 33661 CGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCATTCCCGGTCCTCTTGTA 33720 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| ||| || ||||||||| | |||||||| |||||| ||||||||||||||| Sbjct 33721 CTAGGGAAAGGTCCTCTCAATGCACTAACGCCCACACCGGATATGGACCGAACTGTCTCA 33780 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 | | |||| ||||||| ||| ||| || |||||||| |||||||||||||||||||| || Sbjct 33781 CAAAGTTCAGAACCCAACTCACGTACCGCTTTAATGAGCGAACAGCCCAACCCTTGGAAC 33840 Query 241 CTACTTCAGCC 251 |||| | ||| Sbjct 33841 GTACTACCGCC 33851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780768707732