Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1660 289 7e-76 seq1294 185 2e-44 seq3838 105 2e-20 seq794 87.8 4e-15 seq626 80.6 7e-13 >seq1660 Length=229051 Score = 289 bits (320), Expect = 7e-76 Identities = 315/411 (77%), Gaps = 24/411 (6%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| ||||| ||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 213819 TTTACGACCCGTGAGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 213760 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||||||||||||||||||| |||||||| |||||||||||| ||||||| Sbjct 213759 GCGGAAAATTCCCCACTGCTGCCTCCCGTAAGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 213700 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||||||||||||| ||||||||||| ||| || |||||| | ||| Sbjct 213699 GGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAAGCTATTACCTCACCA 213640 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | ||| ||| | || ||| ||| |||| Sbjct 213639 ACTAGCTAATCAGACGCAAGCCCCTCC-TTAG---GCGG------ATTCCTCCT-TTTGC 213591 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | |||| ||||||||| ||||||||||| ||| ||||||||| |||| Sbjct 213590 TCCTCAGCC--TATGGGGTATTAGCAACCGTTTCCAGCTGTTGTCCCCCTCCCAAGGGCA 213533 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCT-GCTTCCT 363 | ||| | | |||||||||||||||||||| ||| || || || | ||| Sbjct 213532 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA--CTAGGATCC- 213482 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 213481 -TTCCCGTACGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 213432 >seq1294 Length=413606 Score = 185 bits (204), Expect = 2e-44 Identities = 157/192 (82%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCA-TCAGGCTTGCGCCCAT 63 ||||| ||||| ||||||| | | |||||||||| ||| | ||| |||| ||||||| Sbjct 6085 TTTACGACCCGTGAGCCTTCTACCTCCACGCGGCATTGCTCCCGTCAAGCTTTCGCCCAT 6026 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || || ||||||||||||||||||||||| |||||| | |||||||||||| ||||| Sbjct 6025 TGCTGAAAATTCCCCACTGCTGCCTCCCGTAAGAGTCTAGGCCGTGTCTCAGTCGCAGTG 5966 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||||| ||||| |||||||||||||| ||| ||||||| ||| || |||||| | || Sbjct 5965 TGGCTCATCATCTTCTCAGACCAGCTACTGATTGTCGCCTTGGTAAGCTATTACCTCACC 5906 Query 184 AACTAGCTAATC 195 || ||||||||| Sbjct 5905 AAATAGCTAATC 5894 >seq3838 Length=746898 Score = 105 bits (116), Expect = 2e-20 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| |||| ||||||| | | |||||||||| | | | |||||||| |||||||| Sbjct 69616 TTTACGACCCTTGAGCCTTCTACCTCCACGCGGCATTGATCCGTCAGGCTTTCGCCCATT 69675 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGT 110 | |||| |||| |||||||||||||| ||| |||||||| |||||| Sbjct 69676 GCGCAAAATTCGCCACTGCTGCCTCCAGTAAGAGTCTGGGCCGTGT 69721 >seq794 Length=606274 Score = 87.8 bits (96), Expect = 4e-15 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||| | | || |||||||| || | |||| |||||||||| ||| ||| |||| Sbjct 227725 CCTTCTTGACTCCCGACCCATGGCTGGATAAAGCTTTCGCCCATTGTCCAACATTGCCCA 227784 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGA--CCGTGTCTCAGTTCCAGTGTGGC 127 |||| || ||| || | ||||||| |||||||||||| |||| ||||| Sbjct 227785 CTGCAGCATCCAGTGGAAGTCTGGGAGCCGTGTCTCAGTCCCAGCGTGGC 227834 >seq626 Length=562574 Score = 80.6 bits (88), Expect = 7e-13 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 60 CCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 119 |||||| || | | ||||||||| ||||| |||||| | ||||||| ||| || Sbjct 250389 CCATTGCAAAAAAATTCCCACTGCTATCTCCCAACAGAGTCTAGGTCGTGTCTGAGTCCC 250330 Query 120 AGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC 179 |||||||||| |||||||||||| || | | || || |||| ||| || ||||| Sbjct 250329 AGTGTGGCTGATCATCCTCTCAGGACAACAATTGAAGGTTGCCTTGGTAAGCTATTACAT 250270 Query 180 CGCCAACTAGCTAATCC 196 | || ||| ||||||| Sbjct 250269 CATCATCTATCTAATCC 250253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222349429312