Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1660 345 1e-92 seq1294 215 2e-53 seq3838 143 8e-32 seq3824 113 1e-22 seq1665 109 2e-21 seq1458 91.5 4e-16 seq626 84.2 7e-14 seq794 82.4 2e-13 seq3807 77.0 1e-11 seq4018 75.2 3e-11 >seq1660 Length=229051 Score = 345 bits (382), Expect = 1e-92 Identities = 283/342 (83%), Gaps = 3/342 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | | Sbjct 213623 GCGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCGACGATCAGTAGCTGGTC 213682 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| |||||| ||| |||||||||||| ||| |||| ||||||||||||| Sbjct 213683 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCTTACGGGAGGCAGC 213742 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||| Sbjct 213743 AGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAA 213802 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT--AATGACGGTACTTGAGGAGGA 398 ||| ||||||||||| || | |||| |||||| |||||||||| |||||| | Sbjct 213803 GGCTCACGGGTCGTAAACTCCTTTTCTCAGAGAAGATGCAATGACGGTATCTGAGGAATA 213862 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 ||| ||||||||| ||||||||||||||||||| || ||| || |||||||||||| Sbjct 213863 AGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGG 213922 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | | |||||||||| || |||||||| || ||||||| Sbjct 213923 AATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 213963 >seq1294 Length=413606 Score = 215 bits (238), Expect = 2e-53 Identities = 244/331 (74%), Gaps = 32/331 (10%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||||||||||||| ||||| |||||| ||||||||||||||| ||||||||| | | Sbjct 5888 GCGTCTGATTAGCTATTTGGTGAGGTAATAGCTTACCAAGGCGACAATCAGTAGCTGGTC 5947 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||| | |||| |||||| || |||||||||||| | | |||| ||||||||||||| Sbjct 5948 TGAGAAGATGATGAGCCACACTGCGACTGAGACACGGCCTAGACTCTTACGGGAGGCAGC 6007 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGA-TGCAGCAACGCCGCGTGAGCGATGA 339 |||||||||| || |||||||| ||||| ||| | ||||| |||||||| | || Sbjct 6008 AGTGGGGAATTTTCAGCAATGGGCGAAAGCTTGACGGGAGCAATGCCGCGTGGAGGTAGA 6067 Query 340 AGGCCTTCGGGTCGTAAAGCTC--TGTCCTCAAGGAAGAT-------------------- 377 |||| ||||||||||| ||| | | ||||| |||||| Sbjct 6068 AGGCTCACGGGTCGTAAA-CTCCTTTTTCTCAAAGAAGATGCAATGACGTTTTTCTCAGA 6126 Query 378 --------AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCG 429 | |||||||| ||||| |||| ||||||||| ||||||||||||||| Sbjct 6127 GAAGACGCATTGACGGTATCTGAGGGATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCG 6186 Query 430 GTAATACGTAGGGGGCTAGCGTTATCCGGAA 460 |||| || ||| || |||||||||||||| Sbjct 6187 GTAAGACAGAGGATGCAAGCGTTATCCGGAA 6217 >seq3838 Length=746898 Score = 143 bits (158), Expect = 8e-32 Identities = 139/178 (78%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 252 ACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCC 311 |||||| ||| |||| ||| |||||||||||||| |||| |||| |||||||| |||||| Sbjct 69721 ACACGGCCCAGACTCTTACTGGAGGCAGCAGTGGCGAATTTTGCGCAATGGGCGAAAGCC 69662 Query 312 TGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAG 371 ||| | | ||| |||||||| | |||||| |||||||||| || | |||| Sbjct 69661 TGACGGATCAATGCCGCGTGGAGGTAGAAGGCTCAAGGGTCGTAAACTCCTATTCTCATA 69602 Query 372 GAAGAT--AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCG 427 |||||| |||||||||| |||||| |||| ||||||||| |||||| |||||| Sbjct 69601 GAAGATGCAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCACCAGCCG 69544 >seq3824 Length=100310 Score = 113 bits (124), Expect = 1e-22 Identities = 88/104 (85%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 387 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 446 ||| || || |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 44097 ACTCGAAGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 44038 Query 447 AGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || ||||| |||||| ||| ||||||||||| |||||| ||| Sbjct 44037 AGTGTTATTCGGAATGACT-AGGCGTAAAGGGCACGTAGGCGGT 43995 >seq1665 Length=82516 Score = 109 bits (120), Expect = 2e-21 Identities = 104/131 (79%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 372 GAAGAT--AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCG 429 |||||| |||||||||| |||||| |||| |||||||| |||||||||| |||| Sbjct 34344 GAAGATGCAATGACGGTATCTGAGGAATAAGCATAGGCTAACTCTGTGCCAGCAGTCGCG 34285 Query 430 GTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 |||| || ||| || ||||||||||||||| | | |||||||||| || | |||||| Sbjct 34284 GTAAGACAGAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGGAGGTGG 34226 Query 490 TTTCTTAAGTC 500 || ||||||| Sbjct 34225 CTTTTTAAGTC 34215 >seq1458 Length=540783 Score = 91.5 bits (100), Expect = 4e-16 Identities = 78/95 (82%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 406 GCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACT 465 ||||||| ||||||||||||||||||| || || || ||||||||||||||| | | Sbjct 50179 GCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGTATGCAAGCGTTATCCGGAATGA-T 50121 Query 466 GGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||| || |||||||| || ||||||| Sbjct 50120 TGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 50086 >seq626 Length=562574 Score = 84.2 bits (92), Expect = 7e-14 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| ||| || | | |||| |||||||||||| || ||| | | | |||||||| Sbjct 250254 GATTAGATAGATGATGATGTAATAGCTTACCAAGGCAACCTTCAATTGTTGTCCTGAGAG 250313 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | ||||| |||||| ||| ||| ||||||| | | |||| ||||| ||||||||| Sbjct 250314 GATGATCAGCCACACTGGGACTCAGACACGACCTAGACTCTGTTGGGAGATAGCAGTGGG 250373 Query 287 GAATATTGCACAATGG 302 | | || |||||| Sbjct 250374 AATTTTTTTGCAATGG 250389 >seq794 Length=606274 Score = 82.4 bits (90), Expect = 2e-13 Identities = 104/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 235 GCCACATTGGAACTGAGACACGGT--CCAAACTCCTACGGGAGGCAGCAGTGGGGAATAT 292 ||||| ||| |||||||||||| ||| ||| | || ||| || |||||||| ||| | Sbjct 227834 GCCACGCTGGGACTGAGACACGGCTCCCAGACTTCCACTGGATGCTGCAGTGGGCAATGT 227775 Query 293 TGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCG--GG 350 || ||||||||| ||||| | || |||| | | || ||| | ||||| | | | Sbjct 227774 TGGACAATGGGCGAAAGCTTTATCCAGCCATGGGTCGGGAGTCAAGAAGGGCAGTGAAGC 227715 Query 351 TCGTAAAGCTCTGTCCTCAAG 371 |||||||||||| ||||| || Sbjct 227714 TCGTAAAGCTCTTTCCTCGAG 227694 >seq3807 Length=577911 Score = 77.0 bits (84), Expect = 1e-11 Identities = 68/84 (81%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 355 AAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACT 412 |||||||| || || || | | || ||||| ||| || || |||||||||||||||| Sbjct 317819 AAAGCTCTTTCGTCGAGTATGCGATTATGACAAGACTCGAAGAAGAAGCCCCGGCTAACT 317878 Query 413 ACGTGCCAGCAGCCGCGGTAATAC 436 |||||||||||||||||||| || Sbjct 317879 CCGTGCCAGCAGCCGCGGTAAGAC 317902 >seq4018 Length=19976 Score = 75.2 bits (82), Expect = 3e-11 Identities = 69/86 (80%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 415 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAA 474 |||| || ||||||||||| || ||| || ||||||||||||||| | | ||| |||| Sbjct 14032 GTGCTAGTAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGA-TTGGGTGTAA 14090 Query 475 AGGGTGCGTAGGTGGTTTCTTAAGTC 500 || || |||||||| || ||||||| Sbjct 14091 AGCGTATGTAGGTGGCTTTTTAAGTC 14116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497538044288