Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1660 282 1e-73 seq1665 172 1e-40 seq3824 118 3e-24 seq1294 111 4e-22 seq1458 109 1e-21 seq1770 93.3 1e-16 seq4018 87.8 4e-15 seq595 80.6 6e-13 >seq1660 Length=229051 Score = 282 bits (312), Expect = 1e-73 Identities = 307/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 213854 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 213913 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 213914 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 213973 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 213974 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 214033 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| ||||||| Sbjct 214034 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAATGGCGAA 214093 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 214094 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 214153 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||| | | | | ||| || | Sbjct 214154 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAAGCG-CTGTGCGTATCGACCC 214212 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 214213 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 214257 >seq1665 Length=82516 Score = 172 bits (190), Expect = 1e-40 Identities = 207/279 (74%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 131 GGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGA 190 |||||||||| || || | |||||| | ||| |||| | ||||||| ||| Sbjct 34133 GGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTAAGGTAGGGGCAGAGGGA 34074 Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGC 250 ||| | ||| |||||||||||||||||| || | | |||||||| ||||||| || Sbjct 34073 ATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAATGGCGAAAGCACT 34014 Query 251 TTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATAC 310 |||||| | | |||||||||||| ||||||| |||||||||| ||||||||||| Sbjct 34013 CTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGATAC 33954 Query 311 CCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGG 369 || ||||||| ||||||||||||| |||||| | | | | ||| || | | | | Sbjct 33953 CCCAGTAGTCCTAGCCGTAAACGATGGATACTAAGCG-CTGTGCGTATCGACCCGTGCAG 33895 Query 370 TGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| | ||| ||||| ||||||| || ||||||||||| Sbjct 33894 TGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 33856 Score = 100 bits (110), Expect = 7e-19 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| |||||||| |||||||||| |||||||| || ||| || ||| Sbjct 34324 TGAGGAATAAGCATAGGCTAACTCTGTGCCAGCAGTCGCGGTAAGACAGAGGATGCAAGC 34265 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 114 |||||||||||| | ||||||||||| || | |||||| || ||||||| Sbjct 34264 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGGAGGTGGCTTTTTAAGTC 34215 >seq3824 Length=100310 Score = 118 bits (130), Expect = 3e-24 Identities = 88/103 (85%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| || || |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 44097 ACTCGAAGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 44038 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 || ||||| |||||| ||| ||||||||||| |||||| ||| Sbjct 44037 AGTGTTATTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGT 43995 >seq1294 Length=413606 Score = 111 bits (122), Expect = 4e-22 Identities = 267/410 (65%), Gaps = 52/410 (13%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 ||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 6147 TGAGGGATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 6206 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 ||||||||||| | | |||| || ||| || ||| Sbjct 6207 GTTATCCGGAACCATTAGGCGCAA-----------------TCT----------GTCAAA 6239 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 |||||||||||| || || | |||||| | ||| |||| | | ||| || Sbjct 6240 CTTCATGGCTCAACCCTGGACATGAGGTGGAAACTACCAAGCTGGAGTACGGTAGG--CA 6297 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | || |||||||||||||||||| || | | |||| ||| | ||||| Sbjct 6298 GAGGGAATTTCCGATGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACTCCAATAGCGAA 6357 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||||||||| ||||||| ||| |||||| ||||| Sbjct 6358 AGC----------------ACTGACACTGAGAGACGAAAGCCAGGGTAGCAAATGGGATT 6401 Query 305 AGATACCCTGG-----TAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT- 358 |||||||| | |||||| | | ||||||||| |||| | | | | | ||| || Sbjct 6402 AGATACCCCAGTACATTAGTCCTAGGCTTAAACGATGGATACGAAGCG-CTGTGCGTATC 6460 Query 359 AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || | | |||| | ||| ||||| |||||| || ||||||||||| Sbjct 6461 AACCCGTGCAGTGCTGTAGCTAACGCGTCAAGTATCCCGCCTGGGGAGTA 6510 >seq1458 Length=540783 Score = 109 bits (120), Expect = 1e-21 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 21 GCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACT 80 ||||||| ||||||||||||||||||| || || || ||||||||||||||| | | Sbjct 50179 GCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGTATGCAAGCGTTATCCGGAATGATT 50120 Query 81 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCC 140 |||||||||| || |||||||| || ||||||| | || ||| |||||||||||| Sbjct 50119 GGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCTCATGGCTCAACCC 50060 Query 141 CGG 143 || Sbjct 50059 TGG 50057 >seq1770 Length=545590 Score = 93.3 bits (102), Expect = 1e-16 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 279 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 250197 CGAAAGCATGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCATGCTGTAAACGATGA 250255 >seq4018 Length=19976 Score = 87.8 bits (96), Expect = 4e-15 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 30 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAA 89 |||| || ||||||||||| || ||| || ||||||||||||||| | |||| ||||| Sbjct 14032 GTGCTAGTAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGGTGTAAA 14091 Query 90 GGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCC 140 | || |||||||| || ||||||| | | ||| | ||||||||| || Sbjct 14092 GCGTATGTAGGTGGCTTTTTAAGTCTGCCATCAAATTCCATGGCTCAAGCC 14142 >seq595 Length=533780 Score = 80.6 bits (88), Expect = 6e-13 Identities = 91/121 (75%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 198 GTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGG 257 |||||||| | |||||| | |||| | | |||| ||| | |||||| |||| ||| Sbjct 27981 GTGTAGCGATAAAATGCAAAAATATATGAATGAACGCCAAAAGTGAAGGCAGCTTTTTGG 27922 Query 258 ACTGT-AACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGT 316 | | || |||| || | ||||||| ||||||||||||||||||||||||||||| Sbjct 27921 TTTATTAAATGACGCTAAATTGCGAAAGCACGGGGAGCAAACAGGATTAGATACCCTGGT 27862 Query 317 A 317 | Sbjct 27861 A 27861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203150223616