Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq4020 416 5e-114 seq2490 329 6e-88 seq3140 246 6e-63 seq1749 141 2e-31 >seq4020 Length=382506 Score = 416 bits (460), Expect = 5e-114 Identities = 279/310 (90%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| | |||| || ||| | ||| | |||||||| Sbjct 338227 GAACGAGACCTTAACCTGCTAAATAGACCGGCCGACTATGGTTAGCCGCTGTCTTCTTAG 338168 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||| Sbjct 338167 AGGGACTATTGGCGTTTAGCTAATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 338108 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| || Sbjct 338107 AGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTTTATCACCTTGTCC 338048 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 338047 GGAAGGACTGGGTAATCTTGTGAAACTTTGTCGTGCTGGGGATAGAGCATTGCAATTATT 337988 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||| Sbjct 337987 GCTCTTCAACGAGGAATTCCTAGTAAGCGTAAGTCATCAGCTTGCGTTGATTACGTCCCT 337928 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 337927 GCCCTTTGTA 337918 >seq2490 Length=300753 Score = 329 bits (364), Expect = 6e-88 Identities = 263/313 (84%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG--CTT-TGGCGGGTCGCCGGCTTCT 76 || |||||||| | |||||||| |||| | || | ||| | | || | | |||||| Sbjct 248068 GAACGAGACCTCAGCCTGCTAACTAGCTACGCGGGGACTTGTTCCCTGTGGACAGCTTCT 248009 Query 77 TAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 248008 TAGAGGGACTATCGGCGTCTAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 247949 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 |||||||||||||||||||| | | | |||| | || ||||||||| || |||| | Sbjct 247948 CTTAGATGTTCTGGGCCGCATGAGTGTCACACAAATGGACTCAACGAGTTTATAACCTGG 247889 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||||| |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 247888 GCCGAAAGGTTCGGGTAATCTTTTGAAAATTCATCGTGATGGGGATAGATCATTGCAATT 247829 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 |||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| Sbjct 247828 ATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 247769 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 247768 CCTGCCCTTTGTA 247756 >seq3140 Length=124309 Score = 246 bits (272), Expect = 6e-63 Identities = 168/188 (89%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 83095 GCTTCTTAGAGGGACTATCGGCGTCTAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 83154 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| || ||||||||| || Sbjct 83155 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGGACTCAACGAGTTTATA 83214 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 |||| ||||| ||||| |||||||||| | ||| | ||||| |||||||||| |||| Sbjct 83215 ACCTGGGCCGAAAGGTTCGGGTAATCTTTTGAAAATTCATCGTGATGGGGATAGATCATT 83274 Query 250 GCAATTAT 257 |||||||| Sbjct 83275 GCAATTAT 83282 >seq1749 Length=163406 Score = 141 bits (156), Expect = 2e-31 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 179 ACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGG 238 ||||||| || |||| ||| | ||||| |||||||||| | ||| | ||||| |||| Sbjct 61355 ACGAGTTTATAACCTGGGCTGAAAGGTTCGGGTAATCTTTTGAAAATTCATCGTGATGGG 61296 Query 239 GATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAG 298 |||||| |||||||||||||| |||||||||| |||| ||| ||||||||| |||||||| Sbjct 61295 GATAGATCATTGCAATTATTGATCTTCAACGAAGAATTCCTGGTAAGCGCGAGTCATCAG 61236 Query 299 CACGCGTTGATTACGT 314 | ||||||| ||||| Sbjct 61235 CTTGCGTTGACTACGT 61220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947160814336