Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016
41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq4020 416 5e-114
seq2490 329 6e-88
seq3140 246 6e-63
seq1749 141 2e-31
>seq4020
Length=382506
Score = 416 bits (460), Expect = 5e-114
Identities = 279/310 (90%), Gaps = 1/310 (0%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||||||||| | |||| || ||| | ||| | ||||||||
Sbjct 338227 GAACGAGACCTTAACCTGCTAAATAGACCGGCCGACTATGGTTAGCCGCTGTCTTCTTAG 338168
Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138
||||||||| ||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 338167 AGGGACTATTGGCGTTTAGCTAATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 338108
Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198
||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| ||
Sbjct 338107 AGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTTTATCACCTTGTCC 338048
Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 338047 GGAAGGACTGGGTAATCTTGTGAAACTTTGTCGTGCTGGGGATAGAGCATTGCAATTATT 337988
Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318
||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 337987 GCTCTTCAACGAGGAATTCCTAGTAAGCGTAAGTCATCAGCTTGCGTTGATTACGTCCCT 337928
Query 319 GCCCTTTGTA 328
||||||||||
Sbjct 337927 GCCCTTTGTA 337918
>seq2490
Length=300753
Score = 329 bits (364), Expect = 6e-88
Identities = 263/313 (84%), Gaps = 4/313 (1%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCG--CTT-TGGCGGGTCGCCGGCTTCT 76
|| |||||||| | |||||||| |||| | || | ||| | | || | | ||||||
Sbjct 248068 GAACGAGACCTCAGCCTGCTAACTAGCTACGCGGGGACTTGTTCCCTGTGGACAGCTTCT 248009
Query 77 TAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 248008 TAGAGGGACTATCGGCGTCTAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 247949
Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195
|||||||||||||||||||| | | | |||| | || ||||||||| || |||| |
Sbjct 247948 CTTAGATGTTCTGGGCCGCATGAGTGTCACACAAATGGACTCAACGAGTTTATAACCTGG 247889
Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255
|||| ||||| |||||||||| | ||| | ||||| |||||||||| ||||||||||
Sbjct 247888 GCCGAAAGGTTCGGGTAATCTTTTGAAAATTCATCGTGATGGGGATAGATCATTGCAATT 247829
Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315
|||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||
Sbjct 247828 ATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 247769
Query 316 CCTGCCCTTTGTA 328
|||||||||||||
Sbjct 247768 CCTGCCCTTTGTA 247756
>seq3140
Length=124309
Score = 246 bits (272), Expect = 6e-63
Identities = 168/188 (89%), Gaps = 1/188 (1%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 83095 GCTTCTTAGAGGGACTATCGGCGTCTAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 83154
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||
Sbjct 83155 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGGACTCAACGAGTTTATA 83214
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
|||| ||||| ||||| |||||||||| | ||| | ||||| |||||||||| ||||
Sbjct 83215 ACCTGGGCCGAAAGGTTCGGGTAATCTTTTGAAAATTCATCGTGATGGGGATAGATCATT 83274
Query 250 GCAATTAT 257
||||||||
Sbjct 83275 GCAATTAT 83282
>seq1749
Length=163406
Score = 141 bits (156), Expect = 2e-31
Identities = 113/136 (83%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 179 ACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGG 238
||||||| || |||| ||| | ||||| |||||||||| | ||| | ||||| ||||
Sbjct 61355 ACGAGTTTATAACCTGGGCTGAAAGGTTCGGGTAATCTTTTGAAAATTCATCGTGATGGG 61296
Query 239 GATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAG 298
|||||| |||||||||||||| |||||||||| |||| ||| ||||||||| ||||||||
Sbjct 61295 GATAGATCATTGCAATTATTGATCTTCAACGAAGAATTCCTGGTAAGCGCGAGTCATCAG 61236
Query 299 CACGCGTTGATTACGT 314
| ||||||| |||||
Sbjct 61235 CTTGCGTTGACTACGT 61220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947160814336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |