Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq2067 524 3e-146 seq2528 293 8e-77 seq2633 118 4e-24 >seq2067 Length=7856 Score = 524 bits (580), Expect = 3e-146 Identities = 421/500 (84%), Gaps = 15/500 (3%) Strand=Plus/Plus Query 1 TCGAGTCCGAACAGGGCGA-CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 ||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 205 TCGAGTCCGAATAGGGCGATCAGTCGCTGGGTGTAGACCCGAAACCGTGTGATCTACCCC 264 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || ||||| ||||||||||||||||||| ||||||| ||||||| |||| ||||| |||| Sbjct 265 TGTCCAGGGTGAAGGTGCGGTAACACGCACTGGAGGCCCGAACCGACTAGTGTTGCAAAA 324 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 325 CTAGCGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 384 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG 239 ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || Sbjct 385 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATTACCTTCGGGGGTAGAGCACTGTTTTG 444 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 ||||||||||||| |||||||||||||||| ||||||||||||| | | || ||| Sbjct 445 GCTAGGGGGTCATGGCGACTTACCAAACCAAGGCAAACTCCGAATACCGAAGAG---TAC 501 Query 300 CGC--GGGAGTGAGGGCA-TGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 || ||||| || ||| ||||||||| ||||| | | ||||| || || || ||| Sbjct 502 AGCTTGGGAGACAGAGCACCGGGTGCTAACGTCCGGACTCAAGAGGGAAACAACCCAGAC 561 Query 357 TATCAGCTAAGGCCCCGAAA--TGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAG 414 ||||||||| ||| ||| || ||||||| | |||||||| || ||||| Sbjct 562 CGCCAGCTAAGGTCCCTAAAATTG---GCTAAGTGGGA--AACGAAGTGGGAAGGCTAAA 616 Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 |||| ||||||||||||| |||||||||| |||||||||||||||||| |||||||| Sbjct 617 ACAGTCAGGATGTTGGCTTAGAAGCAGCCA-CCATTTAAAGAGTGCGTAATAGCTCACTG 675 Query 475 GTCGAGGAGTCGGGCGTGGA 494 |||||| ||| ||| ||| Sbjct 676 GTCGAGTCGTCCTGCGCGGA 695 Score = 190 bits (210), Expect = 7e-46 Identities = 392/572 (69%), Gaps = 36/572 (6%) Strand=Plus/Plus Query 13 AGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAA 72 ||||| | ||| ||| | | |||||||| | |||||||| ||||| |||||||||| Sbjct 5086 AGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAA 5145 Query 73 GGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGC 132 | | ||| | || |||||||||||||| ||| |||||||||||| || ||||||| Sbjct 5146 GCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGT 5205 Query 133 TGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTAT 192 ||||| ||||||||||| || | | ||| || |||||||||||| |||||| | Sbjct 5206 TGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGT 5265 Query 193 TTAGGTAGTGCCTCAAGTATC---ACCATC-GGGGGTAGAGCACTGTTATGGCTAGGGGG 248 | || | || || | | || ||| |||||| ||||||||| | | | ||| Sbjct 5266 TGAG---GCGCAGCAGTTGACTGGACTATCTAGGGGTAAAGCACTGTT-TCGGTGCGGGC 5321 Query 249 TCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC---GCATCAGTT----TTACCG 301 | | | ||||||| | |||||||| |||| | | | | || ||| Sbjct 5322 TGCGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGGTAGGACTTCCTATTA-AT 5380 Query 302 CGGGAGTGAGGG-CA-------------TGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAG 347 || ||| |||| || |||| | |||| | | | ||||||| ||| Sbjct 5381 AGGAAGTAAGGGTCAGCCAGTGAGACAGTGGGGGATAAGCTTCATTGTCGAGAGGGGAAC 5440 Query 348 AATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGAT 407 | || || | ||||||||||||| ||||||| ||||||| | || || || || Sbjct 5441 AGCCCAGATCACCAGCTAAGGCCCCTAAATGACCGCTAAGTGGTA--AAGGAGGTAGGAG 5498 Query 408 TGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAG 467 ||| |||||||| |||| ||| || | |||||||||| | || ||||||||||||| || Sbjct 5499 TGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAG 5557 Query 468 CTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCA 527 |||||| || || || ||| || || | ||| | |||| |||| ||||||| Sbjct 5558 CTCACTGATCAAGCGCTCTTGCGCCGAAGATGAATGGG-ACTAAGCGGTCTGCCGAAGCT 5616 Query 528 GTGGGATCATTTATAT-GATCGGTAGGGGAGC 558 ||||||| | | || |||||||||||||| Sbjct 5617 GTGGGAT-GTCAAAATACATCGGTAGGGGAGC 5647 >seq2528 Length=1346 Score = 293 bits (324), Expect = 8e-77 Identities = 362/486 (74%), Gaps = 13/486 (3%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| ||||||| ||| ||| ||||||||||||||| |||||||||||| Sbjct 853 CGAGTCTGAATAGGGCGATTTAGTACGTGGTCGTAGACCCGAAACCAGGTGATCTACCCA 794 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || ||||| ||||| | |||||||| |||||| |||||||||| | |||||||| Sbjct 793 TGTCCAGGGTGAAGTTCAGGTAACACTGAATGGAGGCCCGAACCCACGCACGTTGAAAAG 734 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | ||||||||| ||||||||| || |||| | || | |||| ||| |||||||||||| Sbjct 733 TGCGGGGATGAGGTGTGGGTAGCGGAGAAATTCCAATCGAACTCGGAGATAGCTGGTTCT 674 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATC--GGGGGTAGAGCACTGTTA 237 | |||||| |||||| ||||| ||||| | || || |||||||||||| | Sbjct 673 CCCCGAAATAGCTTTAGGGCTAGCCTCGAGTATGAGAGTCGTGGAGGTAGAGCACTGATT 614 Query 238 TGGCTAGGGG--GTCATTGCGACTTACC-AAACCATTGCAAACTCCGAATGCGCATCAGT 294 | ||||||| |||| || ||||| || || | |||||||||||||| | | | Sbjct 613 GGACTAGGGGCCCTCAT--CGGGTTACCGAATTCAGT-CAAACTCCGAATGCCAAAGACT 557 Query 295 TTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGG 354 | || |||||| || | |||||||| ||||| | ||||| || | || | Sbjct 556 TGCTCCTTGGGAGTCAGACAGCGAGTGCTAAGATCCGTTGTCAAGAGGGAAACAGCCCAG 497 Query 355 ACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAG 414 || ||||||||||| ||| || || | ||||| | || || || |||||||| Sbjct 496 ACCATCAGCTAAGGTCCCCAAGTGTGTGTTAAGTGGGA--AAGGATGTGGAGTTGCTAAG 439 Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 ||| | ||||||||||||| |||||||||| |||||||||||||||||| |||||||| Sbjct 438 ACAACCAGGATGTTGGCTTAGAAGCAGCCA-CCATTTAAAGAGTGCGTAATAGCTCACTG 380 Query 475 GTCGAG 480 |||||| Sbjct 379 GTCGAG 374 >seq2633 Length=346445 Score = 118 bits (130), Expect = 4e-24 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 13 AGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAA 72 ||||| | ||| ||| | | |||||||| | |||||||| ||||| |||||||||| Sbjct 29113 AGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAA 29054 Query 73 GGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGC 132 | | ||| | || |||||||||||||| ||| |||||||||||| || ||||||| Sbjct 29053 GCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGT 28994 Query 133 TGTGGGTAGGGGTGAAAGGC 152 ||||| ||||||||||| || Sbjct 28993 TGTGGTTAGGGGTGAAATGC 28974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689530101248