Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq2633 118 2e-24 seq2067 118 2e-24 seq52 98.7 2e-18 seq2528 89.7 9e-16 seq3214 73.4 7e-11 >seq2633 Length=346445 Score = 118 bits (130), Expect = 2e-24 Identities = 176/244 (72%), Gaps = 13/244 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 27452 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 27393 Query 70 GAG-TGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 ||| ||| ||| | | |||||| ||||| |||||| || |||| |||| Sbjct 27392 GAGCTGA--AAATAAGTATAGATCCGGAGATTCCCGAATAGGTTAACC------TTTGAA 27341 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | ||| |||||||| |||||| | ||| || ||| ||||||||||||||||| || Sbjct 27340 AC--TGC-TGCTGAATTCATAGGCAGACAAGAGACAACCTGGCGAACTGAAACATCTTAG 27284 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 |||| ||||||||||| ||| | ||||| | ||||| |||||||||||||||| | Sbjct 27283 TAGCCAGAGGAAAAGAAAGCAAAAGCGATTCTCGTAGTAGCGGCGAGCGAAATGGGAACA 27224 Query 248 GCCT 251 |||| Sbjct 27223 GCCT 27220 Score = 118 bits (130), Expect = 2e-24 Identities = 176/244 (72%), Gaps = 13/244 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 29750 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 29691 Query 70 GAG-TGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 ||| ||| ||| | | |||||| ||||| |||||| || |||| |||| Sbjct 29690 GAGCTGA--AAATAAGTATAGATCCGGAGATTCCCGAATAGGTTAACC------TTTGAA 29639 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | ||| |||||||| |||||| | ||| || ||| ||||||||||||||||| || Sbjct 29638 AC--TGC-TGCTGAATTCATAGGCAGACAAGAGACAACCTGGCGAACTGAAACATCTTAG 29582 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 |||| ||||||||||| ||| | ||||| | ||||| |||||||||||||||| | Sbjct 29581 TAGCCAGAGGAAAAGAAAGCAAAAGCGATTCTCGTAGTAGCGGCGAGCGAAATGGGAACA 29522 Query 248 GCCT 251 |||| Sbjct 29521 GCCT 29518 >seq2067 Length=7856 Score = 118 bits (130), Expect = 2e-24 Identities = 176/244 (72%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 4449 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 4508 Query 70 GAG-TGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 ||| ||| ||| | | |||||| ||||| |||||| || |||| |||| Sbjct 4509 GAGCTGA--AAATAAGTATAGATCCGGAGATTCCCGAATAGGTTAACC------TTTGAA 4560 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | ||| |||||||| |||||| | ||| || ||| ||||||||||||||||| || Sbjct 4561 AC--TGC-TGCTGAATTCATAGGCAGACAAGAGACAACCTGGCGAACTGAAACATCTTAG 4617 Query 188 TAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA 247 |||| ||||||||||| ||| | ||||| | ||||| |||||||||||||||| | Sbjct 4618 TAGCCAGAGGAAAAGAAAGCAAAAGCGATTCTCGTAGTAGCGGCGAGCGAAATGGGAACA 4677 Query 248 GCCT 251 |||| Sbjct 4678 GCCT 4681 >seq52 Length=641604 Score = 98.7 bits (108), Expect = 2e-18 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||||||||||| |||||| |||||||||||||| ||| ||||| Sbjct 214145 GCGAACTGAAACATCTAAGTAGCTAAAGGAAAGGAAATCAACCGAGACTCCGTTAGTAGC 214204 Query 229 GGCGAGCGAAATGGGATGAGCCTT 252 ||||||||||| |||| || ||| Sbjct 214205 GGCGAGCGAAAGCGGATTAGGCTT 214228 >seq2528 Length=1346 Score = 89.7 bits (98), Expect = 9e-16 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 167 CGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTA 226 ||| ||||||||||||||||||| | | ||||| ||||| ||| || |||| || ||||| Sbjct 1346 CGGGGAACTGAAACATCTAAGTACCCGGAGGAAGAGAAAGCAAACGCGATTTCCCAAGTA 1287 Query 227 GTGGCGAGCGAAATGGGATGAGCC 250 | ||||||||||| || || |||| Sbjct 1286 GCGGCGAGCGAAACGGAATTAGCC 1263 >seq3214 Length=309 Score = 73.4 bits (80), Expect = 7e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGG 230 ||||||||||||||||||| | | ||||| ||||| ||| | |||||| ||||| || Sbjct 3 GAACTGAAACATCTAAGTACCCGGAGGAAGAGAAAACAAGAGTGATTCCGTCAGTAGCGG 62 Query 231 CGAGCGAAATGGGATGAGCC 250 |||||||| |||| |||| Sbjct 63 CGAGCGAACGCGGATTAGCC 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918362005792