Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq3041 560 3e-157 seq4020 517 4e-144 seq3764 311 3e-82 seq2802 239 1e-60 seq3807 161 3e-37 seq372 147 7e-33 seq1995 140 1e-30 seq3063 132 2e-28 seq2192 114 4e-23 seq1400 102 3e-19 seq919 96.9 1e-17 seq1934 86.0 2e-14 >seq3041 Length=33331 Score = 560 bits (620), Expect = 3e-157 Identities = 341/359 (95%), Gaps = 3/359 (1%) Strand=Plus/Minus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGG-- 236 |||| || ||||||||| |||| || |||||||||||||||||||| || |||| Sbjct 14580 TCATGGAATAAGTAAAATAACGTCAAAAGTAGTGGTATTTCACTTGCGGCCCTCACGGAC 14521 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 14520 CTCCCACTTATTCTACACCTCTTGAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 14461 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 14460 CAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 14401 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14400 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 14341 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14340 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 14281 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14280 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 14222 >seq4020 Length=382506 Score = 517 bits (572), Expect = 4e-144 Identities = 384/444 (86%), Gaps = 10/444 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 334017 CTTTTGTTCTACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 334076 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || ||| || || Sbjct 334077 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCACCTGGGTC 334136 Query 127 GG---CCCG---CGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTT 180 | |||| | || ||||| ||||||| || | | | | || || | | Sbjct 334137 GCGCACCCGTTGCCGGGGCGCTTAAGGCCAGAAGCGGGGCCAT-AGGCCCGCCCCCACCT 334195 Query 181 CATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGG--C 237 ||| || ||||||||| |||| || |||||||||||||||||||| || |||| | Sbjct 334196 CATGGAATAAGTAAAATAACGTCAAAAGTAGTGGTATTTCACTTGCGGCCCTCACGGACC 334255 Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 334256 TCCCACTTATTCTACACCTCTTGAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 334315 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 334316 AGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 334375 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 334376 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 334435 Query 418 CGAGGCATTTGGCTACCTTAAGAG 441 |||||||||||||||||||||||| Sbjct 334436 CGAGGCATTTGGCTACCTTAAGAG 334459 Score = 181 bits (200), Expect = 3e-43 Identities = 106/110 (96%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 340307 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATT 340366 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 340367 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTC 340416 Score = 172 bits (190), Expect = 2e-40 Identities = 95/95 (100%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 334783 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 334842 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||| Sbjct 334843 AGAGCACTGGGCAGAAATCACATTGCGTCAACATC 334877 Score = 156 bits (172), Expect = 1e-35 Identities = 107/121 (88%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 330402 CTTTTGTTCTACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 330461 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || ||| || || Sbjct 330462 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCACCTGGGTC 330521 Query 127 G 127 | Sbjct 330522 G 330522 >seq3764 Length=349696 Score = 311 bits (344), Expect = 3e-82 Identities = 174/175 (99%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 104 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 163 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 164 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 223 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 224 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGAGT 278 >seq2802 Length=162306 Score = 239 bits (264), Expect = 1e-60 Identities = 155/169 (92%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 254 CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 313 ||||| |||||||||||||||||||| | |||||||||||||||||||||||||| || Sbjct 86175 CCTCTTGAGTCATTTCACAAAGTCGGATTCAAGTCAAGCTCAACAGGGTCTTCTTTCACC 86234 Query 314 GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 86235 GCTGATTTT-CCAAGCCCGTTCCCTTGGGTGTGGTTTCGCTAGATAGTGGATAGGGACAG 86293 Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 ||||||||||||||||||||||||||||||||| | |||||| |||||| Sbjct 86294 TGGGAATCTCGTTAATCCATTCATGCGCGTCACGAGTTAGATAACGAGG 86342 >seq3807 Length=577911 Score = 161 bits (178), Expect = 3e-37 Identities = 206/279 (74%), Gaps = 5/279 (2%) Strand=Plus/Plus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTG-CGCCGAAACGG-- 236 |||| || ||||||||| |||| || ||| |||| |||||||| | | || | Sbjct 420168 TCATAGAATAAGTAAAATAACGTCAAAAGTATTGGTGTTTCACTTCACATCCTCACAGAA 420227 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||| |||||||||| |||| | | ||| ||||||| |||| | ||| ||| |||| Sbjct 420228 CTCCCAGTTATTCTACATCTCTTGACTTGTTTTACAAAGTTGGACAAAAGTGAAGTTCAA 420287 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || |||||| | | | | ||| ||| ||| |||||| |||||||| ||| Sbjct 420288 CATGGTCTTTTATTCTAA-TAATTTTTAGAAGAT-GTTTCCTTGGTTGTGGTTTTGCTGA 420345 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 || ||||||| ||| ||| ||||| |||||| |||||||| ||||| |||||||||| Sbjct 420346 ATGGTAGATATCAACAATGGAAATCTTGTTAATTTATTCATGCACGTCATTAATTAGATG 420405 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTC 455 |||| ||||||| | |||||| | | ||||||||| || Sbjct 420406 ACGAAACATTTGGTTTCCTTAATAAAATCATAGTTATTC 420444 Score = 152 bits (168), Expect = 2e-34 Identities = 121/144 (84%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 392 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 451 |||||||| ||||| |||||||||||||| |||||||||||||||| | | |||||||| Sbjct 420441 ATTCATGCACGTCATTAATTAGATGACGAAACATTTGGCTACCTTAATAAAATCATAGTT 420500 Query 452 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGG 511 ||| ||||| |||| ||| ||| | ||| ||| |||||||||||||| |||||| | | Sbjct 420501 ACTTCCGCCATTTAAACGCACTT-GATGATTTTTTTCACTTTGACATTGAGAGCATTAGA 420559 Query 512 CAGAAATCACATTGCGTCAACATC 535 ||||||||||||| || |||||| Sbjct 420560 TAGAAATCACATTGTGTTAACATC 420583 >seq372 Length=89634 Score = 147 bits (162), Expect = 7e-33 Identities = 115/136 (85%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 324 CCAAGCCCGTTCC-CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 || || ||||| | ||| ||| ||||| ||||| || ||| |||| || ||| ||||||| Sbjct 25348 CCTAGACCGTTACTCTTAGCTTTGGTTCCGCTACATTGTACATAGTGATAGTTGGAATCT 25407 Query 383 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 | ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| ||| Sbjct 25408 CTTTAATCCATTCATGCGCATCACTAATTAGATGACGAGTCATTTGGCTACATTAAAAGA 25467 Query 443 GTCATAGTTACTCCCG 458 |||||| | | ||||| Sbjct 25468 GTCATATTCAATCCCG 25483 >seq1995 Length=149767 Score = 140 bits (154), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 221 ACTTGC-GCCGAAACGG--CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC 277 |||||| ||| ||||| || |||||||| || | |||| |||||||||||||| || Sbjct 39685 ACTTGCTGCCCTAACGGAACTTTCACTTATTTTATATCTCTTGAGTCATTTCACAAAATC 39626 Query 278 GGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCC 337 ||| ||| |||||||| ||| | | ||| |||||| | |||||||| | ||| Sbjct 39625 AACCTAAAGTGAAGCTCAAGTCGGTGTACCTTCATCGCTGAATTACCCAAGCCCATCCCC 39566 Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 ||| ||||||||||||||||||||||| ||| ||| || |||| | || ||| | Sbjct 39565 TTGACTGTGGTTTCGCTAGATAGTAGACAGGCACAAAGGAGATCTTGAGAAATTATTTGT 39506 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 | || ||||| || ||||||| | ||||||||||| Sbjct 39505 GTGC-TCACTCATCAGATGACAATGCATTTGGCTA 39472 >seq3063 Length=252773 Score = 132 bits (146), Expect = 2e-28 Identities = 103/121 (85%), Gaps = 5/121 (4%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||| ||||||||||||||||| |||||| ||| | ||||| |||||||||||||||||| Sbjct 73769 CTCCTACTTATTCTACACCTCTTAAGTCAATTCTCGAAGTCAGACTAGAGTCAAGCTCAA 73828 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC----TGTGGTTTCG 352 || |||||||||||||| |||||| || | ||||||||||||| |||||||||| Sbjct 73829 CAAGGTCTTCTTTCCCCACTGATTTTTCC-ACTCCGTTCCCTTGGCTGGATGTGGTTTCG 73887 Query 353 C 353 | Sbjct 73888 C 73888 >seq2192 Length=331140 Score = 114 bits (126), Expect = 4e-23 Identities = 63/63 (100%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 60 Query 533 ATC 535 ||| Sbjct 61 ATC 63 Score = 93.3 bits (102), Expect = 1e-16 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 403 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGT 462 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 626 TCACTAGATAGATGACAAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCGGT 685 Query 463 T 463 | Sbjct 686 T 686 >seq1400 Length=722580 Score = 102 bits (112), Expect = 3e-19 Identities = 93/115 (81%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGA-GATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTAT 65 |||||| |||||| | |||| || ||||| |||| | |||||||||||| |||||| Sbjct 261225 CTTTTGTTCTACACAAAGATTCCTCTTCTCGTTGAGCTCATCTTAGGACACCTCCGTTAT 261166 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACC 120 |||||||||||||||| |||||| ||||||| ||| || ||||||| || ||| Sbjct 261165 CTTTTAACAGATGTGCCG-CCCAGCGAAACTCCTCACTTGGCAATGTCTTCCACC 261112 >seq919 Length=282225 Score = 96.9 bits (106), Expect = 1e-17 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||| |||||||||||| |||| ||||| |||||||||| || || |||||||||||| Sbjct 219008 CTCCTACTTATTCTACAACTCTTGAGTCAGTTCACAAAGTAAGATTACAGTCAAGCTCAA 218949 Query 297 CAGGGTCTTCTTTCCCCGCTG 317 || |||||| ||||||||||| Sbjct 218948 CATGGTCTTATTTCCCCGCTG 218928 >seq1934 Length=13073 Score = 86.0 bits (94), Expect = 2e-14 Identities = 72/88 (82%), Gaps = 4/88 (5%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCA----TTTCACAAAGTCGGACTAGAGTCAAGC 292 ||| || |||||||||| ||| | | ||| ||||||||||| | |||||||| |||| Sbjct 13013 CTCTCATTTATTCTACAACTCACCATTCACTCATTTCACAAAGTAGTACTAGAGTAAAGC 12954 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATT 320 |||| ||| | ||||||||||||||||| Sbjct 12953 TCAAAAGGATTTTCTTTCCCCGCTGATT 12926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635132351776