Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq2067 226 1e-56 seq3834 102 3e-19 seq627 80.6 9e-13 seq770 78.8 3e-12 >seq2067 Length=7856 Score = 226 bits (250), Expect = 1e-56 Identities = 393/565 (70%), Gaps = 15/565 (3%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| |||| |||||||||||||||| ||| || ||||| |||||| || Sbjct 6819 TCGACGGGTATGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAAGGCTGATTTCC 6760 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| |||||| |||||||| | |||||||||| |||||||||| | || |||||| Sbjct 6759 GTCCAGCCTGAGGAAACCTTTGCACACCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 6701 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAG---ATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | | |||||| || | || || |||||||||| || Sbjct 6700 AGAAACTGTCTACCTGAGAATGTCCCTTGGCCCGTAAATTTTGACACAAGGTTAGAATTC 6641 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCAT 237 | | |||||||||||||| | | ||||| || | | |||| || | Sbjct 6640 TAGCTCTTCTAGAGTGGTATTTCACTGATGGCTCCAGCCCCCCAGAAGGGGCCT--TCTT 6583 Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297 | || ||||||| || | ||| ||| || |||||| ||| | | ||| ||| | Sbjct 6582 TGCCTTCCACCTAAGCTGCGCAAGAAAAACCCAAAGCCAATCCCAGGGAACAGTAAAGCT 6523 Query 298 CCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCA 356 | |||||||| |||| | || | | ||||||| || | | |||||| Sbjct 6522 TCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCA 6463 Query 357 CCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTT 415 ||| | || | ||||||| | || |||||||||| ||||||| ||||||||||| Sbjct 6462 CCGAGTCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTT 6404 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475 ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| Sbjct 6403 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGG 6344 Query 476 CTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGC 535 ||||| | | || | || || | | |||| | ||||||||||| || Sbjct 6343 CTTCAGTCGCTGGCTT------CCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGC 6290 Query 536 ACCGGGCAGGCGTCAGTCCGTATAC 560 || ||||||||||||| || |||| Sbjct 6289 ACTGGGCAGGCGTCAGCCCCCATAC 6265 Score = 224 bits (248), Expect = 3e-56 Identities = 394/568 (69%), Gaps = 28/568 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| |||| |||||||||||||||| ||| || ||||| |||||| || Sbjct 1917 TCGACGGGTATGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAAGGCTGATTTCC 1858 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| |||||| |||||||| | |||||||||| |||||||||| | || |||||| Sbjct 1857 GTCCAGCCTGAGGAAACCTTTGCACACCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 1799 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAG---ATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | | |||||| || | || || |||||||||| || Sbjct 1798 AGAAACTGTCTACCTGAGAATGTCCCTTGGCCCGTAAATTTTGACACAAGGTTAGAATTC 1739 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCAT 237 | | |||||||||||||| | | ||||| || | | |||| || | Sbjct 1738 TAGCTCTTCTAGAGTGGTATTTCACTGATGGCTCCAGCCCCCCAGAAGGGGCCT--TCTT 1681 Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297 | || ||||||| || | ||| ||| || |||||| ||| | | ||| ||| | Sbjct 1680 TGCCTTCCACCTAAGCTGCGCAAGAAAAACCCAAAGCCAATCCCAGGGAACAGTAAAGCT 1621 Query 298 CCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCA 356 | |||||||| |||| | || | | ||||||| || | | |||||| Sbjct 1620 TCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCA 1561 Query 357 CCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTT 415 ||| | || | ||||||| | || |||||||||| ||||||| ||||||||||| Sbjct 1560 CCGAGTCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTT 1502 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475 ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| Sbjct 1501 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGG 1442 Query 476 CTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGC 535 ||||||| | | || ||| ||| ||| |||| |||||||| Sbjct 1441 CTTCAATCAAGAG-CTTGCACCCCA----------TCA--------TTTAATCTTCCAGC 1401 Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||||||||||||||| || ||||| || Sbjct 1400 ACCGGGCAGGCGTCACACCCTATACGTC 1373 >seq3834 Length=649239 Score = 102 bits (112), Expect = 3e-19 Identities = 81/96 (84%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 349 CAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTC 408 || |||||| | | | || | |||||||| ||| ||||||||| ||||||||||||||| Sbjct 375750 CAGTTTCACTGAGTCCATGTTGGAGACAGC-GGGCAGTCGTTACACCATTCGTGCAGGTC 375808 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 | ||||| |||||||||||||||||||||||||| Sbjct 375809 GCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 375844 >seq627 Length=50132 Score = 80.6 bits (88), Expect = 9e-13 Identities = 66/79 (84%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 363 CTGTGGTTG-AGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 421 || |||||| ||||||| ||| |||| |||| |||||||||||||||| |||| ||| Sbjct 43925 CTTTGGTTGGAGACAGCGGGGCAGTCTTTACACCATTCGTGCAGGTCGCTGCTTATGCGA 43866 Query 422 CAAGGAATTTCGCTACCTT 440 |||||||||| |||| ||| Sbjct 43865 CAAGGAATTTGGCTATCTT 43847 >seq770 Length=8122 Score = 78.8 bits (86), Expect = 3e-12 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 389 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 439 ||||||| ||||||| |||||||||||||||||||||||||||||||| || Sbjct 3999 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTATCT 4049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702329571712