Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1660 152 1e-34 seq1294 107 4e-21 >seq1660 Length=229051 Score = 152 bits (168), Expect = 1e-34 Identities = 210/295 (71%), Gaps = 18/295 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 213890 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 213842 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | | | ||| || | ||||| ||||||| | |||| || ||||| ||| ||||| Sbjct 213841 GCA------TCTTCTCTGAGAAAAGGAGTTTACGACCCGT-GAGCCTTCTACCTCCACGC 213789 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| ||||||||||||||||| Sbjct 213788 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAA 213729 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 213728 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 213669 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 ||| | || ||| || ||||| | || |||| ||||| ||||| ||| || Sbjct 213668 CGTCGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCAAGCCCCTC 213614 >seq1294 Length=413606 Score = 107 bits (118), Expect = 4e-21 Identities = 211/306 (69%), Gaps = 12/306 (4%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAA-GCTCCCACAC- 58 |||||||||||| |||||||||||||||||| | | || ||| ||| || | | | Sbjct 6183 GGCTGCTGGCACAGAGTTAGCCGATGCTTATCCCTCAGATACCGTCAATGCGTCTTCTCT 6124 Query 59 GTGGAAGGTTTTATTCC--CTTAT------AAAAGAAGTTTACAATCCGTAGAACCTTCA 110 | | || | ||| | ||| | ||||| ||||||| | |||| || ||||| Sbjct 6123 GAGAAAAACGTCATTGCATCTTCTTTGAGAAAAAGGAGTTTACGACCCGT-GAGCCTTCT 6065 Query 111 TCCTTCACGCTACTTGGCTGGT-TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCT 169 ||| ||||| | | ||| ||| || ||| |||||| || ||||| ||||||| Sbjct 6064 ACCTCCACGCGGCATTGCTCCCGTCAAGCTTTCGCCCATTGCTGAAAATTCCCCACTGCT 6005 Query 170 GCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAA 229 |||||||||| |||| | | |||||||||||| || ||||| | | || ||||||| Sbjct 6004 GCCTCCCGTAAGAGTCTAGGCCGTGTCTCAGTCGCAGTGTGGCTCATCATCTTCTCAGAC 5945 Query 230 CCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATC 289 | ||| || || | || ||| || ||||| | || | || ||||| ||||| Sbjct 5944 CAGCTACTGATTGTCGCCTTGGTAAGCTATTACCTCACCAAATAGCTAATCAGACGCAAG 5885 Query 290 CCCATC 295 ||| || Sbjct 5884 CCCCTC 5879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068755783744