Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016
41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq4020 136 6e-30
seq3629 113 7e-23
>seq4020
Length=382506
Score = 136 bits (150), Expect = 6e-30
Identities = 206/283 (73%), Gaps = 9/283 (3%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||||| |||||||| ||||| ||||| || | |||| |
Sbjct 330077 GTACGAGAGGAACCGTTGA-TTCAGG-TAATTGGTATTTGCACCTGTCCGATCGGGCAAT 330020
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| ||||||||| ||||||||||||||||||| |||||||| | | |
Sbjct 330019 GGTGCGAAGCTACCACCTGCTGGATAATGGCTGAACGCCTCTAAGCCAGAATCCGTACTA 329960
Query 121 GAACGGGGTGAT-TCTCTCCTGCACATCGTAGTCGGATACGAATAG-GCTTCGGCCCCGA 178
||| | | |||| | ||| |||||| |||| | | |||||| |||| | | ||
Sbjct 329959 GAA-GCGATGATGTTGGTCCCGCACATGTTAGTTGCGTTTGAATAGAGCTTTGCTCGTGA 329901
Query 179 ACCTTAGCAGGCCGGCAACGGGCGTCCCG-CGGAA--GCGCGGGGCGCTCAGCTGGCGGA 235
||| ||| ||| || | || | | | ||||| | || ||| || ||| |
Sbjct 329900 ACCATAGTTGGCGGGTCATGGTTGCCTTGACGGAAAGGTCTTGGTAGCT-TGCCTGCGTA 329842
Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|| |||| | ||| || ||| | |||||||||||||||||
Sbjct 329841 TTACAATCAAAATATGGGCGGGGGTGAATCCTTTGCAGACGAC 329799
>seq3629
Length=315822
Score = 113 bits (124), Expect = 7e-23
Identities = 99/121 (82%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62
|||| |||||||| || ||| | ||||||||| ||||| || ||| || |||||
Sbjct 109729 ACGACAGGAACCGTTGA-TTC-GCATAATTGGTAATTGCGTTTGGTTGAAAAGCCAGTGA 109786
Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGA 122
|||||||||||||| | |||||||| |||||||||||||||||||||||||||| |||
Sbjct 109787 CGCGAAGCTACCATGCGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGCTAGA 109846
Query 123 A 123
|
Sbjct 109847 A 109847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819167168768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |