Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq4020 136 6e-30 seq3629 113 7e-23 >seq4020 Length=382506 Score = 136 bits (150), Expect = 6e-30 Identities = 206/283 (73%), Gaps = 9/283 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||||| |||||||| ||||| ||||| || | |||| | Sbjct 330077 GTACGAGAGGAACCGTTGA-TTCAGG-TAATTGGTATTTGCACCTGTCCGATCGGGCAAT 330020 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| ||||||||| ||||||||||||||||||| |||||||| | | | Sbjct 330019 GGTGCGAAGCTACCACCTGCTGGATAATGGCTGAACGCCTCTAAGCCAGAATCCGTACTA 329960 Query 121 GAACGGGGTGAT-TCTCTCCTGCACATCGTAGTCGGATACGAATAG-GCTTCGGCCCCGA 178 ||| | | |||| | ||| |||||| |||| | | |||||| |||| | | || Sbjct 329959 GAA-GCGATGATGTTGGTCCCGCACATGTTAGTTGCGTTTGAATAGAGCTTTGCTCGTGA 329901 Query 179 ACCTTAGCAGGCCGGCAACGGGCGTCCCG-CGGAA--GCGCGGGGCGCTCAGCTGGCGGA 235 ||| ||| ||| || | || | | | ||||| | || ||| || ||| | Sbjct 329900 ACCATAGTTGGCGGGTCATGGTTGCCTTGACGGAAAGGTCTTGGTAGCT-TGCCTGCGTA 329842 Query 236 TTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || |||| | ||| || ||| | ||||||||||||||||| Sbjct 329841 TTACAATCAAAATATGGGCGGGGGTGAATCCTTTGCAGACGAC 329799 >seq3629 Length=315822 Score = 113 bits (124), Expect = 7e-23 Identities = 99/121 (82%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62 |||| |||||||| || ||| | ||||||||| ||||| || ||| || ||||| Sbjct 109729 ACGACAGGAACCGTTGA-TTC-GCATAATTGGTAATTGCGTTTGGTTGAAAAGCCAGTGA 109786 Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGA 122 |||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||| Sbjct 109787 CGCGAAGCTACCATGCGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGCTAGA 109846 Query 123 A 123 | Sbjct 109847 A 109847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819167168768