Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4020 668 0.0 seq3310 410 4e-112 seq2927 268 3e-69 seq104 185 3e-44 seq3140 136 1e-29 seq1951 125 2e-26 seq2054 98.7 3e-18 seq3584 95.1 4e-17 seq2822 77.0 1e-11 seq1331 75.2 3e-11 >seq4020 Length=382506 Score = 668 bits (740), Expect = 0.0 Identities = 456/507 (90%), Gaps = 7/507 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| || ||||| |||| |||||||||||||||||| Sbjct 323210 GTACTCATTCCAATTACCAGACTTGTAAAAGCCCAGTATTGTTATTTATTGTCACTACCT 323269 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 323270 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 323329 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |||| Sbjct 323330 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCACGGTA 323389 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 323390 GGCCTCTATCCTACCGTCGAAAGTTGATAGGGCAGAAATTTGAATGAAACATCGCCGGCA 323449 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 | ||||||||||||||| |||||||||||| ||||||||| | |||||||| ||||| Sbjct 323450 CTAGGCCATGCGATTCGAGAAGTTATTATGATTCACCAAGG-GACCCGAAGG--GTTGG- 323505 Query 301 TTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||| ||||||| ||||||||| || ||| ||||||||||| Sbjct 323506 TTTTTATCTAATAAATACAGCCCTTCCGTGAAGTCGGGCCTTGGTGCACGTATTAGCTCT 323565 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 |||||||| |||||||||| |||||||||||| |||||| |||| |||||||||||||| Sbjct 323566 AGAATTACTACGGTTATCCGAGTAGTAAGGTACCATCAAAGAAACTATAACTGATTTAAT 323625 Query 419 GAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 ||||||||||||||||||| ||| | | || ||||||||| |||||||||||||||||| Sbjct 323626 GAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTACACATGCATGGCTTAATCT 323685 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 323686 TTGAGACAAGCATATGACTACTGGCAG 323712 >seq3310 Length=140028 Score = 410 bits (454), Expect = 4e-112 Identities = 410/533 (77%), Gaps = 48/533 (9%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| || ||||| |||| |||||||||||||||||| Sbjct 102494 GTACTCATTCCAATTACCAGACTTGTAAAAGCCCAGTATTGTTATTTATTGTCACTACCT 102435 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 102434 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 102375 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||| |||||| ||| ||| |||||||| |||| ||||||| |||| |||| Sbjct 102374 TCTCAGGCTTACTCTCC-AAATTGAAACCTAATTCTCCGTCACCCGTTACCACCACGGTA 102316 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| || Sbjct 102315 GGCCTCTATCCTACCGTCGAAAGTTGATAGGGCAGAAATTTGAATGAAACATCGCCAGCG 102256 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG-------G 292 | |||||| |||||||||| |||||| |||| ||||| | | | ||| || Sbjct 102255 CTAAGGCCGTGCGATTCGTCGAGTTATCATGATTCACC--GAAACACCGGAGCAAGCCCC 102198 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAGCATGTA 350 || | ||| |||||||||||||||||| ||||||| ||||||| | ||| ||| Sbjct 102197 GCATCGGTCTTTTATCTAATAAATACAGCCCTTCCGTGAAGTCGCACCTCGATGCACGTA 102138 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC-GA---- 405 ||||||||| |||||| ||||||||| ||||||| || || ||| |||| || Sbjct 102137 TTAGCTCTAAAATTACTACGGTTATCTTAGTAGTAA-TAACCATAAAAGAAACTGACTCT 102079 Query 406 ----------------------------TAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 ||||||||| ||||||||||| ||| |||||| Sbjct 102078 ACTGATATAACCCGGTTGGCATCATAAGTAACTGATTCAATGAGCCATTTGCACTTTCAC 102019 Query 438 TGT-ATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 || | | || |||||| || || |||||||||||||||| | || || || Sbjct 102018 AGTGCAAAAGTGTTTATACCTACACGTGCATGGCTTAATCTTGGTGAAAATCA 101966 >seq2927 Length=200671 Score = 268 bits (296), Expect = 3e-69 Identities = 288/374 (77%), Gaps = 14/374 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||| |||||||| ||| || ||||| |||| |||||||| ||||||||| Sbjct 17759 GTACTCAATCCAATTATCAGATTTGTAAAAGCCCAGTATTGTTATTTATTATCACTACCT 17700 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 | || | || | |||||||||||||| || ||||||||| |||||||||||| ||| Sbjct 17699 CGCCCTCTCAAGGTTGGGTAATTTGCGTGCTTGCTGCCTT----GGATGTGGTAGCTGTT 17644 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||| ||||| ||||| ||| |||||| |||| | ||||| |||| || | Sbjct 17643 TCTCAGGCTACCTCTTGAGAATCAAACTCTAATTTTCCGTCATCCGTTACCACCACGGCA 17584 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC--GG 238 | || |||| ||||| || ||||||||||||||||||||||||||||| ||||| | | Sbjct 17583 GACCTCTATTCTACCGTCTAAAGTTGATAGGGCAGAAATTTGAATGAAACATCGTCAATG 17524 Query 239 CTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG-AAG---GGC 294 || |||||| ||||||||||| |||||| |||| ||| ||| | | | ||| || Sbjct 17523 CT-AAGGCCGTGCGATTCGTTGAGTTATCATGATTCATCAAACACCAGAGCAAGCCCTGC 17465 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAGCATGTATT 352 | | | |||||||||||||| ||| | ||||| |||||| || || | ||| ||||| Sbjct 17464 ATCGATCTTTTATCTAATAAAGACAGCGCTTCCGTGAAGTCAGGCCTTGT-GCACGTATT 17406 Query 353 AGCTCTAGAATTAC 366 || ||||||| ||| Sbjct 17405 AGATCTAGAAATAC 17392 >seq104 Length=520787 Score = 185 bits (204), Expect = 3e-44 Identities = 278/390 (71%), Gaps = 15/390 (4%) Strand=Plus/Minus Query 99 TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 || |||||||||| | | |||||||| | | | | | ||| | || | ||||| Sbjct 61865 TTTCTTGGATGTGATGGTTGTTTCTCAAGTTACTTGTTTAGAAACAAATCTTAATTTTTT 61806 Query 159 GTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 || ||||||| | ||| || |||| |||| |||| | || | |||||||| || ||| Sbjct 61805 GTCACCCGTTATCATCATAGTTGGCCTCTATTCTACTGTTGACAATTGATAGGCCAAAAA 61746 Query 219 TTTGAATGAACCATCGCCGGC-TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACC 277 | | |||||| ||||| | || | ||| | || | ||||| ||||||| |||| ||||| Sbjct 61745 TATAAATGAAACATCGTCTGCGTTAAGATCGTGTGCTTCGTCAAGTTATCATGATTCACC 61686 Query 278 AAGGAGCCCCGAAGGG-------CGTTGGTTTTTTATCTAATAAATACACCCCTTCC--G 328 | | | | || | | | | |||||||||||||||||| |||||| | Sbjct 61685 --GTACCATCAGAGCAATCTCCACATCGATCTTTTATCTAATAAATACAGCCCTTCTATG 61628 Query 329 AAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGG 388 ||||| | ||| ||| |||||||||||||||||| | |||||||| || ||| Sbjct 61627 AAGTCAGACCTTTGTGCAAATATTAGCTCTAGAATTACTGCAGTTATCCAA--AGAAAGA 61570 Query 389 TACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTG 448 | ||||||| |||| ||| |||||||||||| |||| |||||||||| || | | || Sbjct 61569 CATTATCAAAAAAACTATAGCTGATTTAATGAAACATTTGCAGTTTCACATTACAAAGTG 61510 Query 449 CTTATACTTAGACATGCATGGCTTAATCTT 478 ||||| ||| | |||||| |||||| ||| Sbjct 61509 TTTATATTTACATATGCAT-GCTTAAACTT 61481 >seq3140 Length=124309 Score = 136 bits (150), Expect = 1e-29 Identities = 125/154 (81%), Gaps = 8/154 (5%) Strand=Plus/Minus Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| |||||||||| |||||||||||||||||||||||||||||||| |||| || || Sbjct 82072 AGGCCTCTATCCTACCGTCGAAAGTTGATAGGGCAGAAATTTGAATGAAACATCTCCAGC 82013 Query 240 TC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG---AAG---G 292 | || ||| |||||||| | |||||| |||| ||||||| | |||| ||| Sbjct 82012 GCTAAAGCCGTGCGATTCATCGAGTTATCATGATTCACCAA-AACACCCGAGCAAGCCCT 81954 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTC 326 || ||| | |||||||||||||||||| |||||| Sbjct 81953 GCATTGATCTTTTATCTAATAAATACATCCCTTC 81920 >seq1951 Length=230135 Score = 125 bits (138), Expect = 2e-26 Identities = 126/161 (78%), Gaps = 12/161 (7%) Strand=Plus/Plus Query 215 GAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAAT 273 |||||||||||||| ||||||| || | |||||| |||||||||| |||||| |||| | Sbjct 41 GAAATTTGAATGAAACATCGCCAGCGCTAAGGCCGTGCGATTCGTCGAGTTATCATGATT 100 Query 274 CACCAAGGAGCCCCGAAGG-------GCGTTGGTTTTTTATCTAATAAATACACCCCTTC 326 |||| | | | ||| || || | ||| |||||||||||||||||| |||||| Sbjct 101 CACCGA--AACACCGGAGCAAGCCCCGCATCGGTCTTTTATCTAATAAATACAGCCCTTC 158 Query 327 C--GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTA 365 | ||||||||| || ||| |||||||||||||||||| Sbjct 159 CGTGAAGTCGGGCCTTGGTGCACGTATTAGCTCTAGAATTA 199 >seq2054 Length=1151 Score = 98.7 bits (108), Expect = 3e-18 Identities = 71/81 (88%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGC 465 ||||||||||||||||||||||||||||||| ||| | | || ||||||||| |||||| Sbjct 1151 AACTGATTTAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTACACATGC 1092 Query 466 ATGGCTTAATCTTTGAGACAA 486 ||||||||||||| | || || Sbjct 1091 ATGGCTTAATCTTGGTGAAAA 1071 >seq3584 Length=627141 Score = 95.1 bits (104), Expect = 4e-17 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCC--CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTT 100 |||||| |||||||||||| | ||||||||||||||||||||||||| ||||||||||| Sbjct 447629 TATTTAATGTCACTACCTCTCACCGTGTCGGGATTGGGTAATTTGCGCACCTGCTGCCTT 447570 Query 101 CCTTGGATGTG 111 | | ||||||| Sbjct 447569 CTTCGGATGTG 447559 >seq2822 Length=505605 Score = 77.0 bits (84), Expect = 1e-11 Identities = 42/42 (100%), Gaps = 0/42 (0%) Strand=Plus/Minus Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||| Sbjct 12957 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 12916 >seq1331 Length=704751 Score = 75.2 bits (82), Expect = 3e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 187 TATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGC 246 |||| ||||||| |||||||| ||||||||||||||||||| ||||||| || ||| || Sbjct 126591 TATCTGACCATCGGAAGTTGATTGGGCAGAAATTTGAATGAAACATCGCCAGCGCAAAGC 126532 Query 247 C 247 | Sbjct 126531 C 126531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510337514752