Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_029577.1 Length=3003 Score E Sequences producing significant alignments: (Bits) Value seq3686 105 1e-19 >seq3686 Length=1607 Score = 105 bits (116), Expect = 1e-19 Identities = 129/174 (74%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 1710 CCCTTGACCTTCCAA---AACAGGGTATCGGTCGAACCAACGAAGGACATGGGCGATGTC 1766 |||||||||| ||| ||||||||| |||| ||| || |||| || |||||| Sbjct 178 CCCTTGACCT-CCACTCGAACAGGGTACTTATCGAGCCATCGCAGGAGGTGACTGATGTC 120 Query 1767 GATTCCTCCACGAAATTCATCCAACACAACGTGTTCTTGACCTCGGTACCCATCCCAAAA 1826 ||| | ||| ||||||||||| | ||||| | | |||||| |||||||||||||| Sbjct 119 GATACTTCCTCGAAATTCATCGAGGACAACAGTTCCCTGACCTGAATACCCATCCCAAAA 60 Query 1827 TTTAGACCGCGGATCTTTAGGGTAAGCATTAACTCCGGACTCTTCCCAGGCTCG 1880 ||| | || |||||||||| ||||| | | |||| ||||||||||| || Sbjct 59 TTTGGTCCTTGGATCTTTAGAATAAGCTTCGAGACCGGCTTCTTCCCAGGCACG 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9497170248440