Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_029607.1 Length=2862 Score E Sequences producing significant alignments: (Bits) Value seq3686 122 2e-24 >seq3686 Length=1607 Score = 122 bits (134), Expect = 2e-24 Identities = 131/171 (77%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 1438 CCTTTGACCTCTACCATAACTGGGTAGCGGTCGAACCAGCGAAGGACGTGGGCGATGTCG 1497 || |||||||| || ||| ||||| |||| ||| || |||| ||| ||||||| Sbjct 178 CCCTTGACCTCCACTCGAACAGGGTACTTATCGAGCCATCGCAGGAGGTGACTGATGTCG 119 Query 1498 ATTCCTCCTCGAAATTCATCCAAAACAAC-GTGCTCCTGACCTCGGTATCCATCCCAAAA 1556 || | ||||||||||||||| | ||||| || | |||||||| || ||||||||||| Sbjct 118 ATACTTCCTCGAAATTCATCGAGGACAACAGTTC-CCTGACCTGAATACCCATCCCAAAA 60 Query 1557 CTTAGACCTCGGATCTTTAGGGTAAGCGTCCAGAGAGGCTTCGTCCCAGGC 1607 || | ||| |||||||||| ||||| || ||| |||||| |||||||| Sbjct 59 TTTGGTCCTTGGATCTTTAGAATAAGCTTCGAGACCGGCTTCTTCCCAGGC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9045990664535