Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_029616.1 Length=3091 Score E Sequences producing significant alignments: (Bits) Value seq3686 80.6 5e-12 >seq3686 Length=1607 Score = 80.6 bits (88), Expect = 5e-12 Identities = 171/253 (68%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 801 TCGTCGTGCTTGGGAAGAAGCGGGAATTGACGCTTACACTAAATGTCCACGATCCAAGTT 860 || |||||| ||||||||||| || | || ||||| ||||| |||| | |||| || Sbjct 2 TCATCGTGCCTGGGAAGAAGCCGGTCTCGAAGCTTATTCTAAAGATCCAAGGACCAAATT 61 Query 861 TTGGGACGGCTACCAAGATCAACAACATGTTGTCGTTGATGAATTTCGAGGAGGAATTGA 920 |||||| || || || ||| | ||||||| | ||||||||||||||| | || || Sbjct 62 TTGGGATGGGTATTCAGGTCAGGGAACTGTTGTCCTCGATGAATTTCGAGGAAGTATCGA 121 Query 921 TGTGGCGCACTTGCTCAGATGGTTTGACCGCTACCCGGTCCGTGTGGAAATTAAAGG--- 977 | ||| | || ||||| | || ||||| || || ||||| | || || Sbjct 122 CATCAGTCACCTCCTGCGATGGCTCGATAAGTACCCTGTTCGAGTGGAGGTCAAGGGTTC 181 Query 978 GTCAAGCCGAC-CTCTTGTCGCCAACACTATCTGGATTACTTCAAACAAAGACCCAGTAG 1036 |||| || || ||| |||| | ||| ||||| || ||| | |||| || | Sbjct 182 ATCAATCCCACTATCT----GCCACCCGGTTCTATATTACCTCGAACTTACACCCCGTCG 237 Query 1037 AATGGTATCCCGA 1049 ||||| |||||| Sbjct 238 GATGGTTTCCCGA 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9778757506480