Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_029621.1 Length=1182 Score E Sequences producing significant alignments: (Bits) Value seq3686 111 1e-21 >seq3686 Length=1607 Score = 111 bits (122), Expect = 1e-21 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 642 CGAGCCTGGTCTGAAGCAGG-CTCAGACGCTTATCCTAAAGATCCCAGGACTAAATTTTG 700 || |||||| ||||| || ||| || |||||| |||||||||| ||||| |||||||| Sbjct 6 CGTGCCTGGGAAGAAGCCGGTCTC-GAAGCTTATTCTAAAGATCCAAGGACCAAATTTTG 64 Query 701 GGATGGTTACCAGGGTGAATCAAATGTTGTCATGGATGAATTTAGAGGAGTTATCGCGAT 760 |||||| || ||| | || ||||||| | ||||||||| ||||| ||||| || Sbjct 65 GGATGGGTATTCAGGTCAGGGAACTGTTGTCCTCGATGAATTTCGAGGAAGTATCGACAT 124 Query 761 CGGTAATTTGCTCCGATGGCTCGACCGGTATTCTGTCCGTGTGGAAATCAAAGGGTCTTC 820 | || | | || ||||||||||| ||| |||| || ||||| |||| || || || Sbjct 125 CAGTCACCTCCTGCGATGGCTCGATAAGTACCCTGTTCGAGTGGAGGTCAAGGGTTCATC 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3676643137371