Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_029625.1 Length=2039 Score E Sequences producing significant alignments: (Bits) Value seq3552 2351 0.0 seq94 544 1e-151 >seq3552 Length=1434 Score = 2351 bits (2606), Expect = 0.0 Identities = 1364/1403 (97%), Gaps = 1/1403 (0%) Strand=Plus/Plus Query 637 TGTGTTATGAATAACATATCTGGTACTGGTGTTCGTGCGATTGTTGATGTTTACGAGTGT 696 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 TGTGTTATGAATAACATATCTGGTACCGGTGTTCGTGCGATTGTTGATGTTTACGAGTGT 60 Query 697 GTTGCTCGTCGTGATTGGAAGCCGTCGGATAATCCGTATTCCGTGTTCTCTAATTTTTTG 756 ||||||||||||||||||||||||||||||||||| ||||| ||||| || | || || Sbjct 61 GTTGCTCGTCGTGATTGGAAGCCGTCGGATAATCCCTATTCTGTGTTTGCTGAGTTCATG 120 Query 757 CCGGATAATTCTCAGTTCTCGAATACGTCTGCTGCGTTTAGGTTGACCAGTTTGAATCTG 816 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCCGATAATGCTCAGTTCTCGAATACGTCTGCTGCGTTTAGGTTGACCAGTTTGAATCTG 180 Query 817 GGGGTGACTCCGTTCGATAATCCTACGTTTTGTGAGCTCTGGAAGATTTTGAAGGTGCGT 876 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGGGTGACTCCGTTCGATAATCCTACGTTTTGTGAGCTCTGGAAGATTTTGAAGGTGCGT 240 Query 877 CGTATTAAGCTTGAAGATGGTGCTACGGCGACGTTGCAGTTTCGTGATCCGAAGCGTCGA 936 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CGTATTAAGCTTGAAGATGGTGCTACGGCGACGTTGCAGTTTCGTGATCCGAAGCGTCGA 300 Query 937 AAGATTGAGTATCAGTCAAAGGTCTCGAATAAGTCGTCTATCAAAGGGGTTACGCGTTTT 996 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 301 AAGATTGAGTATCAGTCAAAGGTGTCTAATAAGTCGTCTATCAAAGGGGTTACGCGTTTT 360 Query 997 TGGCTGCCTATTGTTTATGGTGTTCCCAGTTTGAATGGTGAAGCTCCGTTGCGTGCTGAG 1056 |||||||||||||||||||||||||| | ||||||| || |||||||||||||||| Sbjct 361 TGGCTGCCTATTGTTTATGGTGTTCCTAATTTGAATAATGGTCGTCCGTTGCGTGCTGAG 420 Query 1057 GCGTGTCAAGTTGCTTTCGATGTTGTTCGCAATTATCATTTCAGACAATTAAGCACATCT 1116 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GCGTGTGAAGTCGCTTTCGATGTTGTTCGCAATTATCATTTCAGACAATTAAGCACATCT 480 Query 1117 ACTCCCATCTGGTGGGTTAATTAATCTCTAGCTAGCGCAGCGGGTTTTAGGGTCAGGGTG 1176 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ACTCC-ATCTGGTGGGTTAATTAATCTCTAGCTAGCGCAGCGGGTTTTAGGGTCAGGGTG 539 Query 1177 TTTAGTTATCAATAATATCTTGATTAAAGTCAGTTATCACTACTCCGAATTCTCTGATTC 1236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TTTAGTTATCAATAATATCTTGATTAAAGTCAGTTATCACTACTCCGAATTCTCTGATTC 599 Query 1237 TTCTATCGAGAGCAGACTTGTCCATGATGTTGGGGTACCAGGAGTCGATGTCTCTGTTGC 1296 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TTCTGTCGAGAGCAGACTTGTCCATGATGTTGGGGTACCAGGAGTCGATGTCTCTGTTGC 659 Query 1297 TTGTGATAAAGAGTCGTCTTGCGATGAACTGTGTAGAGCCTCCTTTAATTTCGACTCGTA 1356 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 660 TTGTGATAAAGAGTCGTCTTGCGATGAATTGTGTAGAGCCTCCTTTAATTTCGACTCGTA 719 Query 1357 GAGGGCTTGAGTCGATAAGTCGTAATAAAGTATTCCACTTGATCCATCCATAGAATTCAT 1416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 GAGGGCTTGAGTCGATAAGTCGTAATAAAGTATTCCACTTGATCCATCCATAGAATTCAT 779 Query 1417 CAAGGACCACGTCTCGCTGTCCATCATAGCCGTCCCACCACTCATTATTTCCTGAATGTT 1476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 CAAGGACCACGTCTCGCTGTCCATCATAGCCGTCCCACCACTCATTATTTCCTGAATGTT 839 Query 1477 GCAGTTTCCAGTAAGCATCCTTGCAATTTCGTTTGCAGAAAGTAGTCTTTCCACATCCGG 1536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GCAGTTTCCAGTAAGCATCCTTGCAATTTCGTTTGCAGAAAGTAGTCTTTCCACATCCGG 899 Query 1537 ATGGTCCGATGAGAATATATACGCGAGTGATCCAGTCCCTTTGACCCATGGTTAGACTCC 1596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 ATGGTCCGATGAGAATATATACGCGAGTGATCCAGTCCCTTTGACCCATGGTTAGACTCC 959 Query 1597 TGTATAGGTAAGCCCATTTGTGTGCCTTGTTCATTGTGATGAAGTGCTCTTGGGCAATTT 1656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 TGTATAGGTAAGCCCATTTGTGTGCCTTGTTCATTGTGATGAAGTGCTCTTGGGCAATTT 1019 Query 1657 GTTTCATTGACGTACCCTCATCCAAAGCTTGTTTGAGTGCAAGAAGATCGTTCCGAGTAC 1716 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 1020 GTTTCATTGACGTACCCTCATCCAAGGCTTGTTTGAGTGCAAGAAGATCGTTCCTAGTAC 1079 Query 1717 CTTGCGCGTTGACCGTAAGGACGCCGTGTGTCCATGGTCCGCCAATCCTAGTGGCCTCCT 1776 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 CTTGCGCGTTGACTGTAAGGACGCCGTGTGTCCATGGTCCGCCAATCCTAGTGGCCTCCT 1139 Query 1777 TGGAAGCATAGTCCATAGCCTGTTGCTGCGTGCCTCTCCGTATTTCCCAATGTGCCCTTG 1836 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1140 TGGAAGCATAGTCCATAGCTTGTTGCTGCGTGCCTCTCCGTATTTCCCAATGTGCCCTTG 1199 Query 1837 GTAAAACCGTTTTGCAATATGTGAGTGACTTAGGTCCCTCGAACTCGACATAGCCTTGAA 1896 |||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1200 GTAAAAGCGTTTTGCAATATGTGAGTGACTTGGGTCCCTCGAACTCGACATAACCTTGAA 1259 Query 1897 GGTGTTCAGTTCCGTTCTCTCCTCGTTCCTTTTGCCAAATTGCGTATTTGACTGTGTCTG 1956 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1260 GGTGTTCAGTTCCGTTCTCTCCTCGTTCCTTTTGCCAAATTGCGTATTTGACTGTTTCTG 1319 Query 1957 TCCAGGACGGTTCGTCGTGCTCAGGGTTGTTGTCTGTGAAGATCCAGTTGCGTGCCTTGG 2016 ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct 1320 TCCAGGAAGGTTCGTCGTGCTCTGGGTTGTTGTCCGTGAAGATCCAGTTGCGTGCCTTTG 1379 Query 2017 CCATGGAACGGAGGTGTGGGCGG 2039 ||||||||| ||||||||||||| Sbjct 1380 CCATGGAACAGAGGTGTGGGCGG 1402 >seq94 Length=2132 Score = 544 bits (602), Expect = 1e-151 Identities = 988/1413 (70%), Gaps = 61/1413 (4%) Strand=Plus/Minus Query 631 TGGAATTGTGTTATGAATAACATATCTGGTACTGGTGTTCGTGCGATTGTTGATGTTTAC 690 ||||||||||||||||| || || ||||||||||| |||||||| | || ||| | ||| Sbjct 2126 TGGAATTGTGTTATGAACAATATCTCTGGTACTGGGGTTCGTGCTGTCGTGGATATGTAC 2067 Query 691 GAGTGTGTTGCTCGTCGTGATTGGAAGCCGTCGGATAATCCGTATTCCGTGTTCTCTAAT 750 || ||||||||||||||||||||| | |||||||| || | || ||||| Sbjct 2066 GAAGTCGTTGCTCGTCGTGATTGGAAGTCCAATGATAATCCTGCGTCGATCTTTGCTAAT 2007 Query 751 TTTTTGCCGGATAATTCTCAGTTCTCGAATACGTCTGCTGCGTTTAGGT-TGACCAGTTT 809 ||| | || ||| ||||| | |||||| |||| | | | | | || ||| Sbjct 2006 TTTATTCCTACGAATCAGCAGTTTGCTAATACGGACTCTGC-TCTGGCTCTAACGAGTAC 1948 Query 810 GAATCTGGGGGTGACTCCGTTCGATAATCCTACGTTTTGTGAGCTCTGGAAGATTTTGAA 869 | |||||||||||||||||||| |||| |||| |||||||| ||||||||| | || Sbjct 1947 TCAGTTGGGGGTGACTCCGTTCGATTGTCCTGCGTTCTGTGAGCTGTGGAAGATTGTTAA 1888 Query 870 GGTGCGTCGTATTAAGCTTGAAGATGGTGCTACGGCGACGTTGCAGTTTCGTGATCCGAA 929 ||| |||||||| ||| | |||||||||||||| || ||| ||||||| ||||||||||| Sbjct 1887 GGTTCGTCGTATCAAGTTGGAAGATGGTGCTACTGCTACGCTGCAGTTCCGTGATCCGAA 1828 Query 930 GCGTCGAAAGATTGAGTATCA-GTCAAAGGTCTCGAATAAGTCGTCTATCAAAGGGGTTA 988 | ||| ||||| || ||| | ||| | ||||||||||| || || || |||| Sbjct 1827 ACATCGTAAGATGGAATATGATATCA----TTTCGAATAAGTCTGCTCTCCGTGGTGTTA 1772 Query 989 CGCGTTTTTGGCTGCCTATTGTTTATGGTGTTCCCAGTTTGAATGGTGAAGCTCCGTTGC 1048 | ||| |||| |||| || ||||| |||||||| | | ||| ||| |||||||| | Sbjct 1771 CTCGTGCTTGGGTGCCGATCGTTTACGGTGTTCCGAATGCTAATCGTGGTGCTCCGTTAC 1712 Query 1049 GTGCTGAGGCGTGTCAA-GTTGCTTTCGATGTTGTTCGCAATTATCATTTCAGACAATTA 1107 |||||||| | ||| || |||||||||||| ||| || |||||||| ||| |||||||| Sbjct 1711 GTGCTGAGTC-TGTTAAGGTTGCTTTCGATTGTGTCCGTAATTATCACTTCCGACAATTA 1653 Query 1108 AGCACATCTACTCCCATCTGGTGGGTTAATTAATCTCTAGCTAGCGCAGCGGGTTTTAGG 1167 ||||| ||| |||||||| || |||||||||||||||||||||||||||||||| Sbjct 1652 TCGACATCAACT-CCATCTGGCGGAGCCATTAATCTCTAGCTAGCGCAGCGGGTTTTAGG 1594 Query 1168 GTCAGGGTGTTT---AGTTATCAA--TAAT--ATCTTGATTAAAGTCAGTTATCACTACT 1220 |||||||| | | |||||| || |||| |||||| | |||||||| || ||||| Sbjct 1593 GTCAGGGTCTGTGAAAGTTATTAATTTAATAAATCTTGCTCCAAGTCAGTAATTTCTACT 1534 Query 1221 CCGAATTCTCTGATTCTTCTATCGAGAGCAGACTTGTCCATGATGT-TGGGGTACCAGGA 1279 |||||||||| | || || |||| || || | |||| | | ||| | Sbjct 1533 CCGAATTCTCGCACTCGTCGCTCGA----AGGCTGATATATGAGATCCCACATCCCACCA 1478 Query 1280 ----GTCGATGTCTCTGTTGCTTGTGATAAAGAGTCGTCTTGCGATGAACTGTGTAGAGC 1335 || ||| || |||||||||||||||||| ||||| ||||| ||||| ||| | Sbjct 1477 CTCTCTCCATGGCT-TGTTGCTTGTGATAAAGATTCGTCGTGCGACGAACTTGATAGTTC 1419 Query 1336 CTCCTTTAATTTCGA-CTCGTAGAGGGCTTGAGTCGATAAGTCGTAATAAAGTATTCCAC 1394 |||||||| ||| | | ||| |||||| |||| |||||||| | || || | Sbjct 1418 CTCCTTTATATTCAACCATGTA-AGGGCTCCTGTCGCATAGTCGTAACATGGT-GTCAAA 1361 Query 1395 TTG-ATCCATCCATAGAATTCATCAAGGACCACGTCTCGCTGTCCATCATAGCCGTCCCA 1453 | | |||||||| || || ||||||| || ||||| | ||||||| || || ||||| Sbjct 1360 TCGTATCCATCCGTAAAAGTCATCAATGATGACGTCACTCTGTCCAGTGTATCCATCCCA 1301 Query 1454 CCA---CTCATTATTTCCTGAATGTTGCAG-TTTCCAGTAAGCATC-CTTGCAATTTCGT 1508 ||| || ||||| ||| || ||||||||||||||| ||| ||||| | Sbjct 1300 CCAAAGAGAATCGTTTCC----AGTTCGAGTTTTCCAGTAAGCATCTGGTGC-ATTTCTT 1246 Query 1509 TTGCAGAAAGTAGTCTTTCCACATCCGGATGGTCCGATGAGAATATATACGCGAGTGATC 1568 |||| || || || || |||||| |||||||||| | ||| | || || ||| Sbjct 1245 CTGCACCAACGTGTTTTGCCTGCTCCGGAAGGTCCGATGACCAAATAAATCCGTGTAATC 1186 Query 1569 CAGTCCCTTTGACCCATGGTTAGACTCC-TGTATAGGT--AAGCCCATTTGTGTGCCTTG 1625 || | ||| | | || | |||||| || ||||| | || || | || || | | Sbjct 1185 CAATTCCTAT-CCTCAAGTTTAGACCCCGTGTATGCCTTGAATGCCTTATG-GTATC-TA 1129 Query 1626 TTCATTGTGATGAAGTGCTCTTGGGCAATTTGTTTCATTGACGTACCCTCATCCAAAGCT 1685 ||| || ||||| | || | ||| |||| |||| ||| | ||| Sbjct 1128 CACATGTTGCCAAAGTGTGTGTTCCAAAGGTCTTTGTCTGACATACCACTATCAATGGCT 1069 Query 1686 TGTTTGAGTGCAAGAAGATCGTT-------CCGAGTACCTTGCGCGTTGACCGTAAGGAC 1738 | |||| || || | || || ||| ||| |||| | |||| | Sbjct 1068 TCCTTGACAGCCAGTAAGTCATTTCTCTGACCGGGTA-GATGCG----GCTCGTATG--T 1016 Query 1739 GCCGTGTGTCCATGGTCCGCCAATCCTAGTGGCCTCCTTGGAAGCATAGTCCATAGCCTG 1798 |||||| |||||||||| | || | || | ||||| | ||| || | || || Sbjct 1015 TCCGTGTTCCCATGGTCCGTCGATACGGGTATCGTCCTTACGCGAATATTCTCTCGCTTG 956 Query 1799 TTGCTGCGTGCCTCTCCGTATTTCCCAATGTGCCCTTGGTAAAACCGTTTTGCAATATGT 1858 | ||| || |||| || | ||||||||| || | |||||||| | |||| | | | Sbjct 955 TGCCTGTGTACCTCGACGCACTTCCCAATGCGCTCGTGGTAAAATAGCTTTGACAAAAGC 896 Query 1859 GAGTGACTTAGGTCCCTCGAACTCGACATAGCCTTGAAGGTGTTCAGTTCCGTTCTCTCC 1918 ||| | | ||| || || || || || ||||| |||||||| || ||||| || Sbjct 895 CAGTCTCCGTGATCCTGTGAGTTCCACGTACCCCTGAAGATGTTCAGTCCCATTCTCGCC 836 Query 1919 TCGTTCCTTTTGCCAAATTGCGTATTTGACTGTGTCTGTCCAGGACGGTTCGTCGTGCTC 1978 || ||| ||||||| |||||| || || | |||| ||| || ||| || | ||| Sbjct 835 TCTTTCTCGTTGCCAAGATGCGTACTTAACGGCCTCTGGCCATGAAGGTAGGTTGCTCTC 776 Query 1979 AGGGTTGTTGTCTGTGAAGATCCAGTTGCGTGC 2011 ||||||||||||||||||||||||||||| || Sbjct 775 GGGGTTGTTGTCTGTGAAGATCCAGTTGCGGGC 743 Score = 284 bits (314), Expect = 2e-73 Identities = 348/483 (72%), Gaps = 0/483 (0%) Strand=Plus/Minus Query 235 CAATCTCGCCGTACCGGGCGTGACACCGGATCGACCACTCGATATGCCGATTCGGCCATG 294 ||||| || || | || |||||||||||||||||||||| |||||||||||| || | Sbjct 485 CAATCCCGTCGCTCTGGTCGTGACACCGGATCGACCACTCAATATGCCGATTCTTCCCTC 426 Query 295 CTCTATAAGCGTCGTCCCGCTCCGAGGAAGTTACGTAATCGTGTTNNNNNNNNNNNNNNN 354 | |||||||||||| ||||||| | ||||||||||||||| ||| Sbjct 425 ATGTATAAGCGTCGTTCCGCTCCAAAGAAGTTACGTAATCGCGTTCGCAAGTTTGCTGCT 366 Query 355 NNNNNNNNNTCTGTTATCGATGGTGAAGTTGCACTTCAGGTTGCTGTAATCCCTTATGCG 414 |||||||||||||||||||||| ||||| || || || || || ||||| Sbjct 365 CGTGTCCGCTCTGTTATCGATGGTGAAGTTGGTCTTCAAGTGGCAGTGATTCCGTATGCC 306 Query 415 TATAACACAATTGCTGGTTATCAGACTCCTGTTACTGTGAAGACGTTGACGAATAATCAA 474 |||| || |||| |||||||| |||||||| || | | | | || ||| ||| Sbjct 305 AATAATACTGTTGCCGGTTATCAAACTCCTGTGACCATTACTGCTCTTACTAATGGGCAA 246 Query 475 AATTCAAATCTCATTCCTGGGTTGTATTCCTGTAATGGCACTCATAACTCTAGCAAAGTT 534 | | | | ||||| | ||||| ||||| ||||| ||||| | Sbjct 245 GCTACGTCGTTGTTGCCTGGTCTTTATTCTACGAATGGGTCTCATCCCTCTACGTCTATC 186 Query 535 AATGGTAATTGGTATGATCTGTATGAAATCTTTCAGACCTATAAGCCGGAGGGCCAGTTG 594 ||||| |||| ||||| | || || |||||||| || ||||||||| | || |||||| Sbjct 185 AATGGAAATTTCTATGACATTTACGAGATCTTTCAAACGTATAAGCCGAAAGGTCAGTTG 126 Query 595 AATGATGATACGATTCTTGAGTTTACATCTGCTACTTGGAATTGTGTTATGAATAACATA 654 | ||||||||| |||||||||||||| || | ||||||||||||||||| || || Sbjct 125 AGTGATGATACTATTCTTGAGTTTACGAATGGTGTGTGGAATTGTGTTATGAACAATATC 66 Query 655 TCTGGTACTGGTGTTCGTGCGATTGTTGATGTTTACGAGTGTGTTGCTCGTCGTGATTGG 714 ||||||||||| |||||||| | || ||| | ||||| |||||||||||||||||| Sbjct 65 TCTGGTACTGGGGTTCGTGCTGTCGTGGATATGTACGAAGTCGTTGCTCGTCGTGATTGG 6 Query 715 AAG 717 ||| Sbjct 5 AAG 3 Score = 109 bits (120), Expect = 7e-21 Identities = 79/90 (88%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 2 AGTACTACC-GCCCACTTCTGTTCCGTCCCTTTATATAGTTGTGTTGTTGTGAATGGTGT 60 ||||||||| | |||| || | |||||||||||||||||||||||||| |||| ||||| Sbjct 716 AGTACTACCCGTCCACCTCCGCGCCGTCCCTTTATATAGTTGTGTTGTTTTGAACGGTGT 657 Query 61 CAGTTTTGACACGATCGCCATCACCCAATG 90 || ||||||| |||||||||||| |||||| Sbjct 656 CATTTTTGACGCGATCGCCATCATCCAATG 627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6415717980710