Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq2878 221 1e-52 seq164 140 4e-28 seq3792 134 2e-26 seq595 122 1e-22 seq467 122 1e-22 seq3761 95.1 1e-14 seq470 95.1 1e-14 seq1308 93.3 5e-14 seq3282 91.5 2e-13 seq2371 84.2 2e-11 >seq2878 Length=397857 Score = 221 bits (244), Expect = 1e-52 Identities = 353/504 (70%), Gaps = 2/504 (0%) Strand=Plus/Plus Query 161686 AATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT 161745 |||||| | || || || ||| |||||||| | | | | ||||||| | || | Sbjct 140289 AATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATTA 140348 Query 161746 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGG 161805 | ||||| ||||| || ||||| ||||| | ||| |||| | || || | ||| Sbjct 140349 TTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATGG 140408 Query 161806 AATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAA 161865 | |||||| || || || || || || || | || || || ||| | || || |||||| Sbjct 140409 ACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGAA 140468 Query 161866 CTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGC 161924 |||||| | ||| || | | |||||||| ||||| ||||| || ||||| |||||||| Sbjct 140469 CTTGCTAGATCTGTTCAAT-TACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGC 140527 Query 161925 TGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCC 161984 ||||||||| || ||||| || |||||| | ||||| || ||||| || || || Sbjct 140528 TGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACC 140587 Query 161985 ATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTG 162044 ||||| || || || ||||| || || | ||||| | ||||| || || || || Sbjct 140588 TAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTG 140647 Query 162045 GACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTC 162104 ||| | || || ||||| |||||||||||||| || | || |||| |||| | | | Sbjct 140648 GACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATG 140707 Query 162105 TGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATAC 162164 || |||||||||| |||||||| || || | | |||||||||| ||||| || Sbjct 140708 CGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACAC 140767 Query 162165 TTTCAAGGCTTTTGACTCTACGCA 162188 ||| |||||| || | || || Sbjct 140768 ATTCCGTGCTTTTAACCCAACTCA 140791 >seq164 Length=700310 Score = 140 bits (154), Expect = 4e-28 Identities = 131/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 162346 AATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTT 162405 ||| | ||||| ||||| ||||| || || || ||||||||||| |||||||| |||||| Sbjct 563857 AATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTT 563916 Query 162406 GAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCA 162465 ||||| || || || || ||||| | || ||||||||| || | || ||| ||||| | Sbjct 563917 GAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCT 563976 Query 162466 GTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCC 162512 ||||| || ||||| || |||||||||| ||||| |||||||| Sbjct 563977 CAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCC 564023 >seq3792 Length=366655 Score = 134 bits (148), Expect = 2e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 160156 TTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGC 160215 ||||||| | ||||||||||| ||||| ||||||||| || |||||||| |||||||| Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 160216 TTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCT 160275 | ||||||| ||| | ||||||| | ||||| || |||||| || | ||||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 160276 TGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCA 160314 ||||||||||||||||| || | ||| ||| |||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq595 Length=533780 Score = 122 bits (134), Expect = 1e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 162283 ATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCT 162342 ||||| ||||| || || | || | |||| ||| |||| || || | || | ||| Sbjct 284383 ATGCTATTCGTACCAGTAACTGGATTATGGATGAGTGCTATTGGGGTTGTAGGTTTAGCT 284324 Query 162343 CTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAA 162402 | ||| | ||||| ||||| ||||| || || || ||||||||||| |||||||| ||| Sbjct 284323 TTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAA 284264 Query 162403 TTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCA 162462 |||||||| || || || || ||||| | || ||||||||| || | || ||| ||||| Sbjct 284263 TTTGAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCA 284204 Query 162463 CCAGTTGATCAACCGCATGA 162482 | ||||| || ||||| Sbjct 284203 GCTCAAGATCAGCCTCATGA 284184 >seq467 Length=265627 Score = 122 bits (134), Expect = 1e-22 Identities = 136/181 (75%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 160628 ACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGA 160687 || ||||| ||||| | |||||||| ||||| ||||| || | | |||| ||||| Sbjct 211264 ACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTCAAGGT 211205 Query 160688 CAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATG 160747 | || | ||||||||||| || | | ||||| ||| || || |||||||| ||| Sbjct 211204 CGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATG 211145 Query 160748 CACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGTCAACTCCTGTT 160807 || || ||||||||||||||||||||||| ||| | ||||||| ||| | |||||| | Sbjct 211144 CATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA---AGCTCCTGCT 211088 Query 160808 G 160808 | Sbjct 211087 G 211087 >seq3761 Length=231418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 159951 CCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTT 160010 |||| ||||||| || | ||||| || |||||||| |||||||| || |||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 160011 CCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGC 160070 | || || ||| | |||||||| || ||||||||||| || || | || || ||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 160071 TCTATAACGGTGGTCCTTTCCAACT 160095 | || ||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq470 Length=504015 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 160978 GACGCTGCTGATGAAGCAGGTGT-TGACGGACCCTACTCCTGTCGTGCTGGTGCTTGCTC 161036 ||||| ||||| ||||| || | | | | |||||||| || ||||| ||||||||||| Sbjct 204287 GACGCCGCTGAAGAAGCCGGACTCTCTCTG-CCCTACTCTTGCCGTGCCGGTGCTTGCTC 204229 Query 161037 TACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCCTGGA 161096 | |||| || || ||| | ||| || || ||| |||| || || ||| |||| Sbjct 204228 TTCTTGCGCAGGAAAGGTCACCGCTGGCGAGGTCGACCAAGCTGACCAGTCCTTCTTGGA 204169 Query 161097 TGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTGATGT 161156 ||||| || | || ||||| |||||||||||| |||| || ||||| ||||| || Sbjct 204168 CGATGACCAGATGGATGAGGGATTCGTCCTGACCTGCATTGCGTACCCCACCTCTGACGT 204109 Query 161157 AACTAT 161162 || || Sbjct 204108 TACCAT 204103 >seq1308 Length=500924 Score = 93.3 bits (102), Expect = 5e-14 Identities = 88/112 (79%), Gaps = 3/112 (3%) Strand=Plus/Minus Query 160697 AACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGT 160756 ||||||||||| || | | ||||| ||| || || |||||||| ||||| || ||| Sbjct 59754 AACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 59695 Query 160757 AACGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGTCAACTCCTGTTG 160808 |||||||||||||||||||| ||| | ||||||| ||| | |||||| || Sbjct 59694 AACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA---AGCTCCTGCTG 59646 >seq3282 Length=366234 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 160598 GGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAAC 160657 || || ||||| ||||| | ||| | || ||||| ||||| | |||||||| ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 160658 TTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTT 160717 || ||||| || | | |||| ||||| | || | ||||||||||| || | | Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 160718 AACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCAC 160765 ||||| ||| || || |||||||| ||||| || |||||||||||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq2371 Length=186017 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 159882 CAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGC 159940 |||||||| || | ||||| | || || || || ||||| ||||| || || || || Sbjct 40992 CAGCAACT-TCAGTATTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGT 41050 Query 159941 ATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTT 160000 ||||||||||| || ||||||| || | ||||| || |||||||| |||||||| || Sbjct 41051 ATCCGTGAACCTGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATT 41110 Query 160001 GTTCC 160005 |||| Sbjct 41111 ATTCC 41115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551347486968600