Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq2878 235 7e-57 seq467 161 1e-34 seq3282 154 2e-32 seq164 132 6e-26 seq1308 116 5e-21 seq3761 109 7e-19 seq595 107 2e-18 seq3792 102 1e-16 seq263 86.0 8e-12 >seq2878 Length=397857 Score = 235 bits (260), Expect = 7e-57 Identities = 344/484 (71%), Gaps = 2/484 (0%) Strand=Plus/Plus Query 190157 TAATTTTCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT 190216 ||||||| | || || ||||| || || || || || | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 190217 ACTTTGGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTG 190276 | | ||||| |||||| | ||||| ||||| | ||| |||| | || || | || Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 190277 GGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGA 190336 | ||||||| || || || || || || || |||| || || ||| | || || ||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 190337 ACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCG 190395 ||| || | ||| || | | |||||||| ||||| |||||||| ||||| ||||| | Sbjct 140468 ACTTGCTAGATCTGTTCAAT-TACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTG 140526 Query 190396 CTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGC 190455 |||||||||| || ||||| || || ||| | || ||||| ||||||| || || | Sbjct 140527 CTGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCAC 140586 Query 190456 CATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACT 190515 | || ||||| || || || || | || | || || || || ||||| ||||||| Sbjct 140587 CTAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACT 140646 Query 190516 GGACGCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGT 190575 |||| | ||||| ||||| ||||||||||| || || | | || | || || | | Sbjct 140647 GGACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTAT 140706 Query 190576 CAGCAATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACA 190635 ||||| || |||| ||||| ||||||||||| | |||||||||||| ||||||| Sbjct 140707 GCGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGATGGTGCAAACA 140766 Query 190636 CGTT 190639 | || Sbjct 140767 CATT 140770 >seq467 Length=265627 Score = 161 bits (178), Expect = 1e-34 Identities = 130/157 (83%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 189671 TCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTC 189730 ||||||| ||||| |||||| | ||||| || ||||| || ||||| || |||| ||| Sbjct 211269 TCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGACAGTC 211210 Query 189731 AAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAG 189790 |||||||||| | ||||| ||||| || || ||||||||||| ||||||||||||| Sbjct 211209 AAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAG 211150 Query 189791 TCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGA 189827 | |||||||| ||||||||||||||||||||||| || Sbjct 211149 TTATGCATGAACGTAACGCTCACAACTTCCCTCTAGA 211113 >seq3282 Length=366234 Score = 154 bits (170), Expect = 2e-32 Identities = 135/168 (80%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 189646 GGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAAC 189705 ||||| |||||||| || | || ||||||| ||||| |||||| | ||||| || ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 189706 TTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTC 189765 || || ||||| || |||| ||||||||||||| | ||||| ||||| || || || Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 189766 AACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCAC 189813 ||||||||| |||||||||||||| |||||||| |||||||||||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq164 Length=700310 Score = 132 bits (146), Expect = 6e-26 Identities = 132/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 190824 CGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACT 190883 ||||| || || ||||| |||||||| || | |||||||| |||||||| || || ||| Sbjct 563863 CGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTTGAAACT 563922 Query 190884 TTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGAT 190943 ||||| ||||||||||| | || ||||||||| || | | ||| ||||| || ||| Sbjct 563923 TTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCTCAAGAT 563982 Query 190944 CAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAAC 190994 || || ||||| ||| ||||||| ||||| || || ||||| | || ||| Sbjct 563983 CAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCCACGTGGAAAC 564033 >seq1308 Length=500924 Score = 116 bits (128), Expect = 5e-21 Identities = 85/99 (86%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 189729 TCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGA 189788 |||||||||||| | ||||| ||||| || || ||||||||||| ||||||||||| Sbjct 59770 TCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGA 59711 Query 189789 AGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGA 189827 ||| |||||||| ||||||||||||||||||||||| || Sbjct 59710 AGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGA 59672 >seq3761 Length=231418 Score = 109 bits (120), Expect = 7e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 188999 CCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCAT 189058 |||| ||||||| || | || ||||| |||||||| ||||||||| || | ||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 189059 CCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGC 189118 | || || ||| | ||||||||||| || |||||||| || || | ||||| ||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 189119 TCTACAACGGTGGTCCTTTCCAACT 189143 | |||||||||||||||| | |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq595 Length=533780 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 190806 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAA 190865 ||| | ||| | || | ||||| || || ||||| |||||||| || | |||||||| Sbjct 284332 GGTTTAGCTTTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAG 284273 Query 190866 GATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCA 190925 |||||||| || || |||||||| ||||||||||| | || ||||||||| || | | Sbjct 284272 GATCCAGAATTTGAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCT 284213 Query 190926 TGGTTGGCACCTGTTGATCAACCCCATGA 190954 ||| ||||| || ||||| || ||||| Sbjct 284212 TGGATGGCAGCTCAAGATCAGCCTCATGA 284184 >seq3792 Length=366655 Score = 102 bits (112), Expect = 1e-16 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 189204 TTACCGTCTCGGTATGCGTCCTTGGATCTGC-ATTGCTTACTCTGCACCTGTTGCAGCAG 189262 ||||||| | ||||||||||||||||| ||| |||| || || || || ||||| || | Sbjct 281814 TTACCGTTTAGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCAGTTGCTGCTG 281872 Query 189263 CATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCT 189322 | | || || || || |||| ||| |||||||||| |||||| |||| ||||| | Sbjct 281873 CTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTT 281932 Query 189323 TGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCA 189362 | |||||| ||| || ||||| | |||| ||| |||| Sbjct 281933 TAGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCA 281972 >seq263 Length=1363 Score = 86.0 bits (94), Expect = 8e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 128009 GGCGCAGGTCACTTCGTGAAGATGGTACATAATGGAATCGAATACGGAATCATGCAAGCA 128068 ||||| ||||||||||| |||||||| ||||| || ||||||||||| || ||||| || Sbjct 1256 GGCGCCGGTCACTTCGTCAAGATGGTCCATAACGGCATCGAATACGGCATGATGCAGGCC 1197 Query 128069 TATGCAGAAGGATTTAA 128085 ||||| ||||| || || Sbjct 1196 TATGCCGAAGGCTTCAA 1180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634047210138000