Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq2878 250 3e-61 seq3761 131 2e-25 seq467 129 7e-25 seq3792 123 3e-23 seq3282 114 1e-20 seq1308 109 6e-19 seq164 107 2e-18 seq595 100 3e-16 seq2371 93.3 5e-14 seq1921 86.0 7e-12 >seq2878 Length=397857 Score = 250 bits (276), Expect = 3e-61 Identities = 336/468 (72%), Gaps = 0/468 (0%) Strand=Plus/Plus Query 164057 TAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT 164116 |||||| | || || ||||| || || || || || | | | ||||||| | || | Sbjct 140288 TAATTTTTTAACTGCCGCTGTTTCTACTCCAGCAAATAGTTTAGCTCATTCTTTACTATT 140347 Query 164117 ACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTG 164176 | | ||||| ||||| | || || || || | | | ||||||||| | || || | || Sbjct 140348 ATTATGGGGACCTGAAGCACAAGGTGATTTTACTCGTTGGTGCCAATTAGGTGGTTTATG 140407 Query 164177 GGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGA 164236 | ||||||| || | || || | || || | || || || ||| | || || ||||| Sbjct 140408 GACTTTTGTAGCTCTTCATGGTGCATTTGCCTTAATAGGCTTTATGTTACGACAATTTGA 140467 Query 164237 AATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGC 164296 | |||| | ||| | ||||| || ||||| |||||||| ||||| || ||||| Sbjct 140468 ACTTGCTAGATCTGTTCAATTACGTCCTTATAATGCAATTGCGTTTTCTGGACCTATTGC 140527 Query 164297 TGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCC 164356 ||| ||||| ||||| ||||| || ||| | || ||||| ||||||| ||||| || Sbjct 140528 TGTTTTTGTATCTGTTTTTCTTATTTATCCTTTAGGACAATCAGGTTGGTTTTTTGCACC 140587 Query 164357 CTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTG 164416 ||||| || || || || || ||||| | | || | ||||| || |||||||| Sbjct 140588 TAGTTTTGGTGTAGCTGCAATTTTTAGATTTATTCTTTTTTTTCAAGGCTTTCATAACTG 140647 Query 164417 GACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTG 164476 ||| | ||||| ||||||||||||||||| || || | | |||| ||||||| | || Sbjct 140648 GACTTTAAACCCATTCCATATGATGGGTGTCGCTGGAGTTTTAGGTGCTGCTCTTTTATG 140707 Query 164477 TGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGA 164524 || ||||| |||||||| || ||||||||||| |||||||||||||| Sbjct 140708 CGCAATTCACGGTGCTACTGTTGAGAATACTTTATTTGAAGATGGTGA 140755 >seq3761 Length=231418 Score = 131 bits (144), Expect = 2e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 160720 CCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTT 160779 |||| ||||||| || | || ||||| |||||||| |||||||| || ||||| | | Sbjct 108171 CCGTATCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCTACCT 108230 Query 160780 CCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGC 160839 | || || ||| | ||||||||||| |||||||||||||| ||| ||||||||||| Sbjct 108231 CTGCAGCTATCGGTTTACACTTCTACCCTATTTGGGAAGCTGCTTCTGTTGATGAATGGT 108290 Query 160840 TCTACAATGGTGGTCCTTACCAACT 160864 | ||||| |||||||||||| |||| Sbjct 108291 TGTACAACGGTGGTCCTTACGAACT 108315 >seq467 Length=265627 Score = 129 bits (142), Expect = 7e-25 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 161388 GGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGAT 161447 ||| || ||| ||||| |||||| | || || || ||||| ||||| || | | || Sbjct 211273 GGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGAC 211214 Query 161448 GGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATG 161507 |||| || || | ||||| |||||||| || | || |||||||||||||||||| Sbjct 211213 AGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATG 211154 Query 161508 GAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 161563 ||||| ||||| || ||||| ||||||||||||||||| || | ||||||| ||| Sbjct 211153 GAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 211098 >seq3792 Length=366655 Score = 123 bits (136), Expect = 3e-23 Identities = 125/160 (78%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 160926 TACCGCCTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGC 160984 ||||| | || ||||| || ||||| ||| ||||||||||| || || ||||||||||| Sbjct 281815 TACCGTTTAGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCAGTTGCTGCTGC 281873 Query 160985 GAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCT 161044 | ||| || ||| | |||| ||| | |||||||| |||||| || |||||||| | Sbjct 281874 TACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCAGACGGTATGCCTTT 281933 Query 161045 GGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAG 161084 |||||||||||||| ||||| |||||| ||| ||||| Sbjct 281934 AGGTATCTCTGGTACTTTCAATTTCATGACTGTTCTCCAG 281973 >seq3282 Length=366234 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 161367 GGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAAC 161426 ||||| ||||| ||||| | ||| || ||| ||||| |||||| | || || || ||| Sbjct 190886 GGTATTTGGTTTACTGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAC 190945 Query 161427 TTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTG 161486 || ||||| || | | || |||| || || | ||||| |||||||| || | Sbjct 190946 TTTAACCAATCTGTTGTTGACAGTCAAGGTCGTGTAATTAACACTTGGGCTGATATTATC 191005 Query 161487 AATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCAC 161534 || ||||||||||||||||||||||| ||||| || ||||| |||||| Sbjct 191006 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCAC 191053 >seq1308 Length=500924 Score = 109 bits (120), Expect = 6e-19 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 161466 AACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGT 161525 ||||| |||||||| || | || ||||||||||||||||||||||| ||||| || ||| Sbjct 59754 AACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 59695 Query 161526 AATGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 161563 || ||||||||||||||||| || | ||||||| ||| Sbjct 59694 AACGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 59657 >seq164 Length=700310 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 164718 AATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTT 164777 ||| | ||||| || |||||||| || || || ||| | |||||||||||||| |||||| Sbjct 563857 AATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAATTT 563916 Query 164778 GAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCA 164837 || || || ||||| || || || | | |||||||| | | || |||||||| | Sbjct 563917 GAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCAGCT 563976 Query 164838 GTAGACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTCTTCC 164884 ||| ||||| || ||| ||||||| |||||||| ||||| || Sbjct 563977 CAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTGCC 564023 >seq595 Length=533780 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 164655 ATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCA 164714 ||||| || || || || | ||| | |||| ||| ||||||| | | ||| | || Sbjct 284383 ATGCTATTCGTACCAGTAACTGGATTATGGATGAGTGCTATTGGGGTTGTAGGTTTAGCT 284324 Query 164715 CTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAA 164774 | ||| | ||||| || |||||||| || || || ||| | |||||||||||||| ||| Sbjct 284323 TTAAATTTACGTGCCTACGATTTTGTTTCCCAAGAAATTCGTGCAGCAGAGGATCCAGAA 284264 Query 164775 TTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCT 164834 ||||| || || ||||| || || || | | |||||||| | | || |||||||| Sbjct 284263 TTTGAAACTTTTTATACAAAAAATATTTTATTAAATGAAGGTATTAGAGCTTGGATGGCA 284204 Query 164835 CCAGTAGACCAGCCACACGA 164854 | ||| ||||| || || Sbjct 284203 GCTCAAGATCAGCCTCATGA 284184 >seq2371 Length=186017 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 160665 TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTT 160724 || |||| ||| || |||| ||||| || || || || ||||||||||||||||| || Sbjct 41006 TTCATTATTGCTTTTATTGCAGCTCCTCCTGTAGATATTGACGGTATCCGTGAACCTGTA 41065 Query 160725 GCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCT 160775 ||||||| || | || ||||| |||||||| |||||||| || ||||| Sbjct 41066 TCTGGTTCTCTTCTTTACGGAAATAACATCATTTCTGGTGCTATTATTCCT 41116 >seq1921 Length=72791 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 161493 GCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTC 161552 || ||||||||||||||||| ||||| || ||||| |||||||||||||||||||| | Sbjct 54761 GCCAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTGGACTTA 54820 Query 161553 GCTGCTG 161559 ||||||| Sbjct 54821 GCTGCTG 54827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559299075750800