Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marchantia_20polymorpha_20subsp._20ruderalis_20[genbank_20GCA_5F0016 41455.1_202016-05-10] 4,137 sequences; 205,718,403 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq2917 125 1e-23 >seq2917 Length=31685 Score = 125 bits (138), Expect = 1e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 162607 GCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACA 162666 |||| || ||| ||||| ||||| ||||| | ||| ||||||||| ||||||||| Sbjct 13020 GCCTGTAACGGCATTCTTTTCAACCACGAGTCGCCGCGCCGAGGAGAGAACTTCGTCACA 12961 Query 162667 CGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTT 162726 ||||| ||| |||||||||| || || | || || || || || | || | || Sbjct 12960 CGCAAAATCACCCGAGCCTTGGGACGGATCAAGGTCGGCCTGCAGAGCAAGCTGTATCTC 12901 Query 162727 GGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGG 162786 || ||||| || || | ||||||||| |||| |||||||| ||||| |||||| Sbjct 12900 GGGAACCTGAAGGCGTCCAGGGACTGGGGATTCGCCGGCGACTACGTCGAGGCCATGTGG 12841 Query 162787 TTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAAC 162830 | ||||| ||||| |||||||| || || || ||| | || || Sbjct 12840 CTCATGCTGCAGCAGGAGAAGCCCGACGACTACGTGGTGGCCAC 12797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691423442916120