Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1989 93.3 8e-17 seq1990 89.7 1e-15 >seq1989 Length=105340 Score = 93.3 bits (102), Expect = 8e-17 Identities = 107/143 (75%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| |||||| |||||||| ||| ||||||||||||| || ||||| | |||| Sbjct 35389 GACCCGAAACTGAGTGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACGGGCCTTGGA 35448 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 35449 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 35508 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || |||||| || |||||| || Sbjct 35509 AACCAAACTCAGAGATAGCTGGT 35531 >seq1990 Length=122890 Score = 89.7 bits (98), Expect = 1e-15 Identities = 209/309 (68%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGT-GATTCG 70 |||| |||||||||| | |||| ||| || ||||| || |||| || | || || Sbjct 90458 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGAATCGAATCT 90517 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||||||| ||| | |||||||| ||| ||| || | || |||||||| Sbjct 90518 CTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTTATAGGT-AGTGGCCTGGTTAAGG 90576 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | ||| ||||| || ||||||||| ||| ||||| | || | Sbjct 90577 GAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCCTAGGGCAATT-GTCACTACTTA 90632 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | ||| Sbjct 90633 TGGACCCGAACCTGGGTGATCTAACCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGG 90692 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||||||| | ||||||| | | || ||||||||||| || Sbjct 90693 AGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGC 90752 Query 311 CAATCAAAC 319 || || ||| Sbjct 90753 CACTCGAAC 90761 Score = 89.7 bits (98), Expect = 1e-15 Identities = 209/309 (68%), Gaps = 6/309 (2%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGT-GATTCG 70 |||| |||||||||| | |||| ||| || ||||| || |||| || | || || Sbjct 117644 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGAATCGAATCT 117585 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||||||| ||| | |||||||| ||| ||| || | || |||||||| Sbjct 117584 CTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTTATAGGT-AGTGGCCTGGTTAAGG 117526 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | ||| ||||| || ||||||||| ||| ||||| | || | Sbjct 117525 GAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCCTAGGGCAATT-GTCACTACTTA 117470 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | ||| Sbjct 117469 TGGACCCGAACCTGGGTGATCTAACCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGG 117410 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||||||| | ||||||| | | || ||||||||||| || Sbjct 117409 AGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGC 117350 Query 311 CAATCAAAC 319 || || ||| Sbjct 117349 CACTCGAAC 117341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972780641280