Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1989 152 7e-35 seq1990 145 1e-32 >seq1989 Length=105340 Score = 152 bits (168), Expect = 7e-35 Identities = 180/243 (74%), Gaps = 23/243 (9%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 36497 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 36439 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| ||| Sbjct 36438 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCC----------GCT------- 36396 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 ||| | || | | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 36395 ---TTC-CTAGGAAAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 36341 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | || |||| | | | ||||||||||| |||||| || ||||||||||||||| | Sbjct 36340 TCAACATGGTTCTCTCAAGCGCCTTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 36281 Query 246 GTA 248 ||| Sbjct 36280 GTA 36278 >seq1990 Length=122890 Score = 145 bits (160), Expect = 1e-32 Identities = 181/248 (73%), Gaps = 20/248 (8%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 91828 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 91770 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| | || || |||||||| || Sbjct 91769 AGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACCTCCT-------- 91718 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || || ||||||||||||||||||||||||||| |||||||||| Sbjct 91717 -----TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 91669 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||| ||||||||||||| | |||||||||||| Sbjct 91668 TTCCTTAGAGAGAGTTATCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGT 91609 Query 241 TTACGGTA 248 || |||| Sbjct 91608 TTCGGGTA 91601 Score = 145 bits (160), Expect = 1e-32 Identities = 181/248 (73%), Gaps = 20/248 (8%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 116274 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 116332 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| | || || |||||||| || Sbjct 116333 AGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACCTCCT-------- 116384 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || || ||||||||||||||||||||||||||| |||||||||| Sbjct 116385 -----TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 116433 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||| ||||||||||||| | |||||||||||| Sbjct 116434 TTCCTTAGAGAGAGTTATCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGT 116493 Query 241 TTACGGTA 248 || |||| Sbjct 116494 TTCGGGTA 116501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694386613270