Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq1990 105 7e-21 seq1989 105 7e-21 seq1952 84.2 2e-14 >seq1990 Length=122890 Score = 105 bits (116), Expect = 7e-21 Identities = 125/166 (75%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || | | | |||| Sbjct 91607 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGATAA-CTCTCTCTAAG 91665 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| ||||| Sbjct 91666 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGAGG 91723 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| || ||| |||||| |||||||| |||||||||||| || Sbjct 91724 TCGCAGTGACCAGGCCCAGGCGACTGTTTACCAAAAACACAGGTCT 91769 Score = 105 bits (116), Expect = 7e-21 Identities = 125/166 (75%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || | | | |||| Sbjct 116495 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGATAA-CTCTCTCTAAG 116437 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| ||||| Sbjct 116436 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGAGG 116379 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| || ||| |||||| |||||||| |||||||||||| || Sbjct 116378 TCGCAGTGACCAGGCCCAGGCGACTGTTTACCAAAAACACAGGTCT 116333 >seq1989 Length=105340 Score = 105 bits (116), Expect = 7e-21 Identities = 127/173 (73%), Gaps = 5/173 (3%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || |||||||||||||||||| ||| || | | ||| Sbjct 36283 CAAACCGACACAGGTGAACAAGTAGAGTATACTAAGGCGCTTGAGAGAACCATGTTGAAG 36342 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| |||||| |||||||||||| || |||| | | || || || | | Sbjct 36343 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTTTCCTAGGAAAGCG--- 36399 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||| | | ||| || |||||||| ||||||||||| || ||| || Sbjct 36400 --GCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAA 36450 >seq1952 Length=2374447 Score = 84.2 bits (92), Expect = 2e-14 Identities = 105/144 (73%), Gaps = 9/144 (6%) Strand=Plus/Minus Query 45 GTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGGAACTAGGCAAACTGACCCTG 104 || |||||||||||||| ||||| || || | |||||||| |||||| ||||| || Sbjct 784608 GTAGAATATACTAAGGCACTTGAAAAAAACATATTGAAGGAACTTGGCAAAATGACCTTG 784549 Query 105 TAACTTCGGGATAAAGGGTCCCTACCCAG--AAATGGGAGGGCGCAGAGAATAGGTCCAG 162 ||||||| ||| || |||| | | || || |||| | | ||| ||||| Sbjct 784548 TAACTTCAGGAGAAGGGGTGCTTTCCTAGAAAAATAGTACATATCAGGGAATA------- 784496 Query 163 GCAACTGTTTAACAAAAACACAGG 186 ||||||||||| ||||||||||| Sbjct 784495 GCAACTGTTTATTAAAAACACAGG 784472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531189759460