Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1990 358 1e-96 seq1989 297 4e-78 seq1952 127 4e-27 seq1905 84.2 5e-14 seq1922 80.6 6e-13 >seq1990 Length=122890 Score = 358 bits (396), Expect = 1e-96 Identities = 295/356 (83%), Gaps = 14/356 (4%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 92013 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 91954 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 91953 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 91894 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACT-GCTTCGATTGCTCTAACAGATC 185 ||||||||||||||||| || ||||||| | || || ||||| | | | |||||| Sbjct 91893 TAGTTACGGCCGCCGTTCACCGGGGCTT-CGGTCGCTGGCTTCTCTGTC---ATCAGATC 91838 Query 186 -------CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 |||||||||||| |||| |||||||||||||| || |||||| ||||| ||| Sbjct 91837 ACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGA 91778 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT--G 296 ||| || || ||||||||||||||||||||||||| ||||||| || ||||| ||| Sbjct 91777 CTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACCTCCT 91718 Query 297 TCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | | |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 91717 TTGTGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 91662 Score = 358 bits (396), Expect = 1e-96 Identities = 295/356 (83%), Gaps = 14/356 (4%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 116089 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 116148 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 116149 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 116208 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACT-GCTTCGATTGCTCTAACAGATC 185 ||||||||||||||||| || ||||||| | || || ||||| | | | |||||| Sbjct 116209 TAGTTACGGCCGCCGTTCACCGGGGCTT-CGGTCGCTGGCTTCTCTGTC---ATCAGATC 116264 Query 186 -------CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 |||||||||||| |||| |||||||||||||| || |||||| ||||| ||| Sbjct 116265 ACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGA 116324 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT--G 296 ||| || || ||||||||||||||||||||||||| ||||||| || ||||| ||| Sbjct 116325 CTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACCTCCT 116384 Query 297 TCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | | |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 116385 TTGTGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 116440 >seq1989 Length=105340 Score = 297 bits (328), Expect = 4e-78 Identities = 287/366 (78%), Gaps = 11/366 (3%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||| ||||| || | ||||||| | Sbjct 36683 TACTCCGCATCTTCACGGAGAGTTCAATTTCACTGAGTCCATGTTGGAGACAGCAGGGCA 36624 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 36623 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 36564 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| |||||| | || ||||| || |||| Sbjct 36563 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCT----TCCA----TTCGAAGCCTATAAC 36512 Query 181 AGATCCCC--TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || || || |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 36511 ACTTCTCCTTTTCACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 36452 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| | || || Sbjct 36451 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCG-CTTTC 36393 Query 299 ATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATA 358 ||| | |||||||||||||| |||||||||||||||||||||||||||||| | || Sbjct 36392 CTAGGAAAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCAACATG 36333 Query 359 GTTCTC 364 |||||| Sbjct 36332 GTTCTC 36327 >seq1952 Length=2374447 Score = 127 bits (140), Expect = 4e-27 Identities = 188/263 (71%), Gaps = 9/263 (3%) Strand=Plus/Plus Query 96 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTA 155 ||||| |||||| |||| |||| || ||| ||||| || | ||||| | ||||| Sbjct 784324 GACAAAGAATTTTGCTATCTTAAGATAATTAAAGTTATTGCTGTTGTTTATCGAGGCTTC 784383 Query 156 AGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTC 215 |||| || | || | || || || |||||||||||||| | ||| ||| Sbjct 784384 CATTCAAAGCCTA---TGAT---ACTTCTCTTTTTTACCTTCCAGCACCGAGTAGGTGTC 784437 Query 216 AGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTT 275 || | ||||||||| | || | ||||||||||| ||||||||||| |||||||| ||| Sbjct 784438 AGATTCTATACATCATATTTCTACTTAGCAGAATCCTGTGTTTTTAATAAACAGTTGCTA 784497 Query 276 GGGCCTATTCTCTGCGGCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCA 335 ||| | | | | | || ||| | ||||||||||||| ||||||| ||||| Sbjct 784498 TTCCCTGATATGTACTATTTTTC-TAGGAAAGCACCCCTTCTCCTGAAGTTACAAGGTCA 784556 Query 336 TTTTGCCGAGTTCCTTAACAATA 358 ||||||| |||||||| ||||| Sbjct 784557 TTTTGCCAAGTTCCTT--CAATA 784577 >seq1905 Length=1584080 Score = 84.2 bits (92), Expect = 5e-14 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 31 CACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACT 90 |||| ||||| | | |||| ||||||| || |||||| ||||||| | |||| | ||| Sbjct 1024880 CACCAAGTCTCTCTCTCAGACTGTGCCCAGATTGTTACGTCTTTCGTACAGGTCTGGACT 1024939 Query 91 TACCCGACAAGGAATTTCGCTACCTTAGG 119 |||| |||||||||||| || |||||||| Sbjct 1024940 TACCTGACAAGGAATTTTGCCACCTTAGG 1024968 >seq1922 Length=1795736 Score = 80.6 bits (88), Expect = 6e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 |||||||||||| | ||||||||||||||||||||||||||| || ||| || |||| Sbjct 950470 GAGACAGTGCCCGGGTTGTTACGCCTTTCGTGCGGGTCGGAACTAACTCGAAGAGAAATT 950411 Query 107 TCGCTAC 113 ||||||| Sbjct 950410 TCGCTAC 950404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062378858240