Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1990 480 2e-133 seq1989 298 2e-78 >seq1990 Length=122890 Score = 480 bits (532), Expect = 2e-133 Identities = 407/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 87198 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 87257 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||||||||||||||||| |||||||| | || ||| Sbjct 87258 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTT 87317 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | | ||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 87318 TTGAAAGAAAGGAGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 87375 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 87376 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 87435 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 ||||||| |||| || || |||| |||||||||||| || ||||||||||||| ||| Sbjct 87436 CATCATTTAGTTTGGAACCCTAAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 87495 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||| ||||||||||| | ||||| |||||||||||||||||| | || Sbjct 87496 GACGTCAAGTCAGCATGCCCCTTACGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 87555 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||||| || | || ||| | |||||||||||||| Sbjct 87556 AAAGGGTCGCGACCCCGCGAGGGCAAGCTAACCTCAAAAACCCGGCCTCAGTTCGGATTG 87615 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 87616 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 87675 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 87676 CGGTGAATCCGTTCCCG 87692 Score = 480 bits (532), Expect = 2e-133 Identities = 407/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 120904 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 120845 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||||||||||||||||| |||||||| | || ||| Sbjct 120844 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTT 120785 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | | ||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 120784 TTGAAAGAAAGGAGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 120727 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 120726 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 120667 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 ||||||| |||| || || |||| |||||||||||| || ||||||||||||| ||| Sbjct 120666 CATCATTTAGTTTGGAACCCTAAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 120607 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||| ||||||||||| | ||||| |||||||||||||||||| | || Sbjct 120606 GACGTCAAGTCAGCATGCCCCTTACGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 120547 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||||| || | || ||| | |||||||||||||| Sbjct 120546 AAAGGGTCGCGACCCCGCGAGGGCAAGCTAACCTCAAAAACCCGGCCTCAGTTCGGATTG 120487 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 120486 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 120427 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 120426 CGGTGAATCCGTTCCCG 120410 >seq1989 Length=105340 Score = 298 bits (330), Expect = 2e-78 Identities = 388/538 (72%), Gaps = 60/538 (11%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| |||||||||||||||||||||||| || |||||||||||||||||| Sbjct 31874 TACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 31933 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| |||||||| ||| Sbjct 31934 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATA---TGAA----- 31985 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGA---------CAGGTGATGCATGGT 171 || || | | || |||| ||||| | || |||||| ||||||| Sbjct 31986 TA-AGTTTGC---TTGTCCTTAATGGGACGGTACGAAAATTTATACAGGTGCTGCATGGC 32041 Query 172 TGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT---- 227 |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 32042 TGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCTATAACGAGCGCAACCCTCGTT 32101 Query 228 ---------TAAG----------------CTTAGT-----TGCCAT--CATT--AAGTTG 253 |||| ||| || || || ||| | || Sbjct 32102 TTGTGTTGCTAAGACATGCGTTTTGGGGTCTTTGTAAAATTGACAATCCATGCCATGTAC 32161 Query 254 GGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCAT 313 |||||| | |||||| |||| | || ||||||||||||||| |||||||| || Sbjct 32162 TGCACTCACAAGAAACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCG 32221 Query 314 CATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAA 373 |||| |||||||| |||||||||||||||||||||||| | ||||| || ||| | Sbjct 32222 CATGGCCCTTATGGGCTGGGCTACACACGTGCTACAATGGCAATTACAATAGGAAGCAAG 32281 Query 374 ACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTC 433 | ||| ||| ||| || |||| | ||||||||||||||| |||||||||| Sbjct 32282 GCTTTAAGGCGGAGCGAAT-CCGGAAAGATAGCCTCAGTTCGGATTGTTCTCTGCAACTC 32340 Query 434 GACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGT 491 || | |||||| |||||||||||||||||| ||||||||||| ||||||||| || Sbjct 32341 GAGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGT 32398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503970070400