Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1990 192 1e-46 seq1989 102 2e-19 >seq1990 Length=122890 Score = 192 bits (212), Expect = 1e-46 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 92200 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 92259 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | ||||| | |||||| |||| ||||| || | |||| ||||||||||||| | Sbjct 92260 GTGCAAAGGTTTCCTCAGGCTGGACGGAAATCAGCCTTCGAGTGTAAAGGCAAAAGGGAG 92319 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||||| | ||| | |||| |||||||||||||||||| |||| ||||||| |||| Sbjct 92320 CTTGACTGCAAGACCTACCAGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGT 92379 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 92380 ACCAAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 92428 Score = 192 bits (212), Expect = 1e-46 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 115902 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 115843 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | ||||| | |||||| |||| ||||| || | |||| ||||||||||||| | Sbjct 115842 GTGCAAAGGTTTCCTCAGGCTGGACGGAAATCAGCCTTCGAGTGTAAAGGCAAAAGGGAG 115783 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||||| | ||| | |||| |||||||||||||||||| |||| ||||||| |||| Sbjct 115782 CTTGACTGCAAGACCTACCAGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGT 115723 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 115722 ACCAAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 115674 >seq1989 Length=105340 Score = 102 bits (112), Expect = 2e-19 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 130 AGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AG 188 ||||| ||||||||| |||||||||||||||||||||| | | ||| || ||| || Sbjct 36866 AGTTTATCTGGGGCGGATGCCTCCCAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCGAG 36925 Query 189 CTTGGATG--GAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCC 246 || || || | | | | || | || || | ||| || |||||| || || Sbjct 36926 CTAATATTATGACAGCTTTAG---AGCGTAATGGTAGAAGCCTGCCTGACTGTGAGACTT 36982 Query 247 TCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCC 306 | |||| | ||| |||||||||||| | || |||||||| || | | ||||| ||| Sbjct 36983 ACCAGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCCCGTGTGGAAGGGCT 37042 Query 307 GTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| |||||| |||| ||| | ||||||| Sbjct 37043 CTCGCTCAACGGATCAAAGGTACGCCGGGGATA 37075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982380450240