Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1990 253 4e-65 seq1989 215 1e-53 >seq1990 Length=122890 Score = 253 bits (280), Expect = 4e-65 Identities = 262/336 (78%), Gaps = 19/336 (6%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||| | ||| | |||||| | | |||||||||||| || ||||||||||||||| Sbjct 86761 TTTACGACCCGTGGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 86704 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 86703 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 86644 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||||||| ||| ||||||||||||||| ||||||| |||||| Sbjct 86643 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAAGCCATTGCCTCAC 86584 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| ||| | || | || ||| || || ||| |||| Sbjct 86583 CAACTAGCTAATCAGACGCAAGCCCCTC-CTTAG-GC----------GGATTCCTCCTTT 86536 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA-- 299 | | | | | |||| ||||||||| |||||||| ||| ||||| || ||| Sbjct 86535 TACTCCTCAG-CTTATGGGGTATTAGCAACCGTTTCCAGCTGTTGTCCCC--CTCCCAAG 86479 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||| ||| || || ||||||||||||||||| || Sbjct 86478 GGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 86443 Score = 253 bits (280), Expect = 4e-65 Identities = 262/336 (78%), Gaps = 19/336 (6%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||| | ||| | |||||| | | |||||||||||| || ||||||||||||||| Sbjct 121341 TTTACGACCCGTGGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 121398 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 121399 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 121458 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||||||| ||| ||||||||||||||| ||||||| |||||| Sbjct 121459 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAAGCCATTGCCTCAC 121518 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| ||| | || | || ||| || || ||| |||| Sbjct 121519 CAACTAGCTAATCAGACGCAAGCCCCTC-CTTAG-GC----------GGATTCCTCCTTT 121566 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA-- 299 | | | | | |||| ||||||||| |||||||| ||| ||||| || ||| Sbjct 121567 TACTCCTCAG-CTTATGGGGTATTAGCAACCGTTTCCAGCTGTTGTCCCC--CTCCCAAG 121623 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||| ||| || || ||||||||||||||||| || Sbjct 121624 GGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 121659 >seq1989 Length=105340 Score = 215 bits (238), Expect = 1e-53 Identities = 182/220 (83%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 1 CTTTACAATC--CGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | || | ||||||| ||| ||||| |||| | ||||||||||||||| Sbjct 31427 CTTTACAAGCTGCGTTGCCCTTCTT-CACTCACGCCATATTGCC-GGATCAGGCTTTCGC 31370 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 31369 CCATTGTCCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 31310 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||||| | |||||| ||| |||||| Sbjct 31309 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCGTAGGCTTGGTCAGCTTTTACCT 31250 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || | |||||||| | ||||| Sbjct 31249 AACCAACTACCTAATACTACGTGGGCTCATCAAACAGCGC 31210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071978667200