Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1990 271 3e-70 seq1989 194 6e-47 >seq1990 Length=122890 Score = 271 bits (300), Expect = 3e-70 Identities = 344/470 (73%), Gaps = 26/470 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 90803 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 90744 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 90743 CCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 90684 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGTG 314 | |||| |||||| |||| ||||| |||||||| | |||||||| | | ||| Sbjct 90683 TTCACCCAAGCTTCATCCTGGTCATGGTTAGATCACCCAGGTTCGGGTCCATAAGTAGTG 90624 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | |||||| |||||||||||||||||||| || || |||| Sbjct 90623 ACAAT----TGCCCTAGGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 90571 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| || | || |||| |||||||||||||| |||||||| |||| Sbjct 90570 CCAGGC--CACTACCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA------ 90519 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 | | | ||| |||| || | ||| || | ||||||| || ||||||||| Sbjct 90518 ----GAGATTCGATTCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 90463 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||||||||||||||||||| | | |||||||||||| | Sbjct 90462 TCCCCGATGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCACCCA 90403 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| |||| |||||||| | |||||||||| ||| || Sbjct 90402 GGAGTATTTAGCCTTACAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 90353 Score = 271 bits (300), Expect = 3e-70 Identities = 344/470 (73%), Gaps = 26/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 117299 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 117358 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 117359 CCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 117418 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGTG 314 | |||| |||||| |||| ||||| |||||||| | |||||||| | | ||| Sbjct 117419 TTCACCCAAGCTTCATCCTGGTCATGGTTAGATCACCCAGGTTCGGGTCCATAAGTAGTG 117478 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | |||||| |||||||||||||||||||| || || |||| Sbjct 117479 ACAAT----TGCCCTAGGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 117531 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| || | || |||| |||||||||||||| |||||||| |||| Sbjct 117532 CCAGGC--CACTACCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA------ 117583 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 | | | ||| |||| || | ||| || | ||||||| || ||||||||| Sbjct 117584 ----GAGATTCGATTCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 117639 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||||||||||||||||||| | | |||||||||||| | Sbjct 117640 TCCCCGATGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCACCCA 117699 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| |||| |||||||| | |||||||||| ||| || Sbjct 117700 GGAGTATTTAGCCTTACAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 117749 >seq1989 Length=105340 Score = 194 bits (214), Expect = 6e-47 Identities = 198/253 (78%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 56 ATTCGGAGTTTGGTTGATTTCGGT-AAGCTTGTGGGCC-CCCTAGACCATCCAGTGCTCT 113 ||||||||||| ||| ||||| |||||| |||||| |||||| |||| |||||||| Sbjct 35640 ATTCGGAGTTTCCTTGGGGTCGGTCAAGCTT-TGGGCCACCCTAGCCCATTGAGTGCTCT 35582 Query 114 ACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATC 173 ||||| || | ||||| ||||| |||| ||| |||||| ||| ||||||||||| Sbjct 35581 ACCTCAGGCCATAAACATTATACGCTCTACCTCAATAGATTTCGCGGAAAACCAGCTATC 35522 Query 174 ACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAA 233 | |||||| ||||||||||||||||| ||||| ||||||||| | ||| | || || Sbjct 35521 TCTGAGTTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATAC 35462 Query 234 GTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGCGCTTCAACCTGCCCATGGATAGATCAC 292 ||||||||||||||||| | ||| | | ||||||||||| ||||| |||||||| Sbjct 35461 GTGGGTTCGGTCCTCCAAGGCCCGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATCAC 35402 Query 293 TTCGCTTCGGGTC 305 | | |||||||| Sbjct 35401 TCAGTTTCGGGTC 35389 Score = 107 bits (118), Expect = 7e-21 Identities = 105/133 (79%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTA--CTATTTCACTCCCCGCCAG-GGGTA 504 || |||| |||||| ||| | |||||||| ||||| ||||||| | |||| Sbjct 35191 CTTCGACTGATTGTTTGCATCGGATTTCAGGTTTTCTATTGCACTCCCTTTCTTAGGGTT 35132 Query 505 CTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 |||||||||||||||||||||||||||| | |||| |||||| |||| || |||||||| Sbjct 35131 CTTTTCACCTTTCCCTCACGGTACTTGTACACTATTGGTCACTGAGGAATACTTAGGCTT 35072 Query 565 AACGGGTGGTCCC 577 | |||||||||| Sbjct 35071 AGAGGGTGGTCCC 35059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817563829760