Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1990 226 7e-57 seq1989 105 2e-20 >seq1990 Length=122890 Score = 226 bits (250), Expect = 7e-57 Identities = 308/414 (74%), Gaps = 13/414 (3%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| | Sbjct 90737 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 90681 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| || |||||| ||| | || |||||| || || Sbjct 90680 ACCCAAGCTT-CATCCTGGTCAT-GGTTAGATCACCCAGGTT-CGGGTCCATAAGT-AGT 90625 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 90624 GACAATT-GCCCTAGGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAG 90567 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 |||||| ||||||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 90566 -GCCACTACCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATTCGATT 90508 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || |||||||||| | ||||||||||||||| | ||||| Sbjct 90507 CTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGT 90449 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||||||| Sbjct 90448 TCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATTTAGCCT 90389 Query 367 TGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 90388 TACAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 90335 Score = 226 bits (250), Expect = 7e-57 Identities = 308/414 (74%), Gaps = 13/414 (3%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| | Sbjct 117365 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 117421 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| || |||||| ||| | || |||||| || || Sbjct 117422 ACCCAAGCTT-CATCCTGGTCAT-GGTTAGATCACCCAGGTT-CGGGTCCATAAGT-AGT 117477 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 117478 GACAATT-GCCCTAGGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAG 117535 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 |||||| ||||||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 117536 -GCCACTACCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATTCGATT 117594 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || |||||||||| | ||||||||||||||| | ||||| Sbjct 117595 CTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGT 117653 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||||||| Sbjct 117654 TCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATTTAGCCT 117713 Query 367 TGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 117714 TACAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 117767 >seq1989 Length=105340 Score = 105 bits (116), Expect = 2e-20 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGAT--CTATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| |||| | ||||||| | ||||| ||||||| | |||||||||| Sbjct 35186 ACTGATTGTTTGCATCGGATTTCAGGTTTTCTATTGCACTCCCTTTCTTAGGGTTCTTTT 35127 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || |||||| ||||| | || | || |||| ||| |||| Sbjct 35126 CACCTTTCCCTCACGGTACTTGTACACTATTGGTCACTGAGGAATACTTAGGCTTAGAGG 35067 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 35066 GTGGTCCCCC 35057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241575292160